PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0251s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 411aa    MW: 46202.3 Da    PI: 6.9549
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0251s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.6e-32235289155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  SapurV1A.0251s0040.1.p 235 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 289
                             68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.796232292IPR017930Myb domain
SuperFamilySSF466892.33E-17233289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28234290IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23235290IPR006447Myb domain, plants
PfamPF002491.5E-8239288IPR001005SANT/Myb domain
PfamPF143792.5E-21319366IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNTRNIDSEE RVHRNDGVMI GDFVNLSSEY FGNQQIRNMT PRLPPAVMEA GCQQQNFIPE  60
RSSNSIMSRF ESPASAFYAT ERCMRFPQYD FQVGSSFCSQ YSKSYDSHPS SGPNYSIDIG  120
EQSDHSFGLN SILESVSKPH FSYFNSFDNS DKGLGSSSGN KLPSQHHNKF LDSHGVSLGN  180
RFSVPFQGNQ DRQVRCSPYN SPFAGLSFNS REGKQSPGFS LGGGPTSSGK DLPSKTRIRW  240
TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSDGLTIFHV KSHLQKYRIA KYMPDPSEGK  300
AEKRTSINDV SQLDIKTGFQ IREALQLQLD VQRRLHEQLE IQRNLQLRIE EQGKQLKMMF  360
DQQQKTTNSL LNNQNLDITS PEEPTFSLED IDVSILEGSD NNTHFPSKIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-23235292158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-23235292158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-23235292158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-23235292158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0251s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479700.0EF147970.1 Populus trichocarpa clone WS0126_F15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308371.30.0myb family transcription factor PHL5
TrEMBLA0A2K2A4K20.0A0A2K2A4K2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.17e-83G2-like family protein