PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0248s0400.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 686aa    MW: 75877.2 Da    PI: 6.0326
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0248s0400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.91.8e-963316844374
                    GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                              + ++Ae +++g+   aq +Larl+++ + p g+p qR a+yf+ AL+  l+          ++s ++  n + ++ a+k fse+sP
  SapurV1A.0248s0400.2.p 331 PICQAAELIETGNPVHAQGILARLNHQlSLPIGNPYQRTAFYFKDALQLLLHT--------SNSSIDNACNLIFKIGAYKSFSELSP 409
                             5789*********************99788999******************99........344444556799************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                             il+f+++t+Nq +le +eg er+Hi+Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s ++ el  t+e+L+ fA+e+++pf
  SapurV1A.0248s0400.2.p 410 ILQFANFTCNQVLLEVFEGFERIHIVDFDIGYGGQWASLMQELALRAGGAPSLKITAFASPSSLDELELGFTRENLRIFASEINMPF 496
                             *************************************************************************************** PP

                    GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                             e ++l  ++l +   +  Lr+ ++E++aVnl +   ++ +++ +l+      L++vk+lsP+vvv  e+ +d+++ +F++++ +a++
  SapurV1A.0248s0400.2.p 497 ELEILNLESLGSGsWPMPLRMPEKEVTAVNLPIG--SFSNDPSTLPL----ALRFVKHLSPNVVVSLERGCDRSDLPFAHHVNHAIQ 577
                             *****77766665257789*************95..55555666665....************************************ PP

                    GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                              ys+l++sl+a    + ++ +k+Er+l+++ i+++v  ++++     e+   Wr  + ++GF+p+++s+++++qa++l+++++++g+
  SapurV1A.0248s0400.2.p 578 SYSTLLESLDAV-NVNPDALQKIERFLVQPGIEKIVLGRHRS----PERTPPWRTLFLQSGFTPLTFSNFTESQAEYLVKRTPVRGF 659
                             *********665.34668999****************99998....9999************************************* PP

                    GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                             +ve+++ slvl+W+++ L+++SaWr
  SapurV1A.0248s0400.2.p 660 HVEKRQSSLVLCWQRKDLIAASAWR 684
                             ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.191302664IPR005202Transcription factor GRAS
PfamPF035146.2E-94331684IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MKAMPLPFES FQGKGVLDFA SSTTSSPDSL HQYRHQWQNN SSKESCGFFV GSTEPTSVLD  60
TISRQSPPTS SSTLSYSQGG GGASTDTTNG VAASGGSNPC VDEKCGQQLG MEDWESVLPG  120
SPSQEQSILR LIMGDIEDPS TGLNKLLQSG SRSLDMEHGS GFGVVDQVFG FDISNMSSAS  180
ANLVANNNNI DPSSIHGLFQ QQQQQAAFDQ DEKPQILNPG MISNQNQHQF VQNSATLLPF  240
SYSPLQEHHN NQHFLSPPPS KRINSGPVGV NYVPKVFDSR PPEMFLPRQH QQQQQNHQFQ  300
LLQQHQQRQG MITNDHELAN QQQLQQAIIN PICQAAELIE TGNPVHAQGI LARLNHQLSL  360
PIGNPYQRTA FYFKDALQLL LHTSNSSIDN ACNLIFKIGA YKSFSELSPI LQFANFTCNQ  420
VLLEVFEGFE RIHIVDFDIG YGGQWASLMQ ELALRAGGAP SLKITAFASP SSLDELELGF  480
TRENLRIFAS EINMPFELEI LNLESLGSGS WPMPLRMPEK EVTAVNLPIG SFSNDPSTLP  540
LALRFVKHLS PNVVVSLERG CDRSDLPFAH HVNHAIQSYS TLLESLDAVN VNPDALQKIE  600
RFLVQPGIEK IVLGRHRSPE RTPPWRTLFL QSGFTPLTFS NFTESQAEYL VKRTPVRGFH  660
VEKRQSSLVL CWQRKDLIAA SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3133468325378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0248s0400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2118040.0AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033505.10.0PREDICTED: scarecrow-like protein 22 isoform X2
TrEMBLA0A2K1XR730.0A0A2K1XR73_POPTR; Uncharacterized protein
STRINGPOPTR_0014s05910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-149GRAS family protein