PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0247s0220.8.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 181aa MW: 19940.8 Da PI: 10.0217

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0247s0220.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	83	127	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky SapurV1A.0247s0220.8.p 83 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 127 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-18	77	133	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.094	78	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-7	81	133	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-19	81	130	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-12	83	127	IPR001005	SANT/Myb domain
CDD	cd00167	3.85E-10	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MPFTRPVFPS SPFCTQFHAL EKEKLCMIMS TNLSSSTSGE GAGAEANPGG PAHSMATPPP 60 AATASSDGSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI 120 RSHAQKYFLK IQKNGTVAHL PPPRPKRKAS HPYPQKASKI GLTILTKYDD KCYCTLKSPS 180 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0247s0220.8.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148355	1e-138	EF148355.1 Populus trichocarpa x Populus deltoides clone WS01313_L11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373855.1	7e-69	protein REVEILLE 8 isoform X1
Refseq	XP_024442937.1	7e-69	protein REVEILLE 8 isoform X1
Refseq	XP_024442939.1	6e-69	protein REVEILLE 8 isoform X3
Swissprot	Q8RWU3	4e-63	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A2K1XCP4	2e-67	A0A2K1XCP4_POPTR; Uncharacterized protein
TrEMBL	A0A3N7HXM2	1e-67	A0A3N7HXM2_POPTR; Uncharacterized protein
TrEMBL	A9PIX5	6e-68	A9PIX5_9ROSI; Uncharacterized protein
STRING	POPTR_0016s08470.1	2e-68	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	5e-62	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0247s0220.8.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]