PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0246s0200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 463aa MW: 50396.3 Da PI: 7.0122 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.9 | 6e-30 | 252 | 306 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ SapurV1A.0246s0200.2.p 252 KARRCWSPDLHRRFVNALHMLGGSQ-ATPKQIRELMKVDGLTNDEVKSHLQKYRLH 306 68*******************9987.****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.19 | 249 | 308 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-17 | 249 | 309 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 250 | 309 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-25 | 252 | 306 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-7 | 254 | 304 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MASPSELSLD CKPHSYSMLL KSFGEQIDQT QKLEDFLSLL EEERLKIDVF KRELPLCMQL 60 LTNAVETSRQ QLQACRANQV PIPVLEEFIP LKTPPSEALE KTANISDKSN WMTTAQLWSQ 120 DSNESKPQTT MTTPKQTDIG FNVSSKLALD TKQRNGGAFL PFSKERNLCP SPTLALASTD 180 NQMELDHKKC SEVENGFSCQ KRESSGHKIG NGGAVIEQAK GAGNNSSPDG HPTNTATAAS 240 ASNTSTTQTH RKARRCWSPD LHRRFVNALH MLGGSQATPK QIRELMKVDG LTNDEVKSHL 300 QKYRLHTRRP SPSPQAAGGP APQLVVLGGI WVPPEYATAA HTGGGTLYGA YPASHAPPPH 360 FCAAPPVSQD FYAAAATPPP PLHHHTLYHQ LHLYKPTSQV HSSPESDVRG TRDRSESIED 420 GKSESSSWKV ESGENDGGER KGLAALREDG EESNGSEITL KV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0246s0200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324957.2 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9ZQ85 | 1e-128 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A2K1WXC8 | 0.0 | A0A2K1WXC8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s06410.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-108 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0246s0200.2.p |
Publications ? help Back to Top | |||
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