PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0246s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 464aa    MW: 50495.4 Da    PI: 7.0122
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0246s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31252307156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  SapurV1A.0246s0200.1.p 252 KARRCWSPDLHRRFVNALHMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 307
                             68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.45E-17249310IPR009057Homeodomain-like
PROSITE profilePS5129413.491249309IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-28250310IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-26252307IPR006447Myb domain, plants
PfamPF002493.6E-7254305IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSFGEQIDQT QKLEDFLSLL EEERLKIDVF KRELPLCMQL  60
LTNAVETSRQ QLQACRANQV PIPVLEEFIP LKTPPSEALE KTANISDKSN WMTTAQLWSQ  120
DSNESKPQTT MTTPKQTDIG FNVSSKLALD TKQRNGGAFL PFSKERNLCP SPTLALASTD  180
NQMELDHKKC SEVENGFSCQ KRESSGHKIG NGGAVIEQAK GAGNNSSPDG HPTNTATAAS  240
ASNTSTTQTH RKARRCWSPD LHRRFVNALH MLGGSQVATP KQIRELMKVD GLTNDEVKSH  300
LQKYRLHTRR PSPSPQAAGG PAPQLVVLGG IWVPPEYATA AHTGGGTLYG AYPASHAPPP  360
HFCAAPPVSQ DFYAAAATPP PPLHHHTLYH QLHLYKPTSQ VHSSPESDVR GTRDRSESIE  420
DGKSESSSWK VESGENDGGE RKGLAALRED GEESNGSEIT LKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-14252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-14252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-14252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-14252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0246s0200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324957.20.0myb family transcription factor EFM
SwissprotQ9ZQ851e-131EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2K1WXC80.0A0A2K1WXC8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s06410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-111G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]