PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0240s0100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 665aa MW: 73882.2 Da PI: 8.7596 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.6e-24 | 153 | 254 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+ SapurV1A.0240s0100.3.p 153 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVL 238 99****************************963.3445679********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F + +++el+++++r+ SapurV1A.0240s0100.3.p 239 FL--RGEDGELRLGIRRA 254 **..449999*****996 PP | |||||||
2 | Auxin_resp | 112.7 | 3.4e-37 | 279 | 360 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v Y+Pra+++ Fvv+++k+ k++++ v+ G+Rfkm+fe++ds+err sG+v+g+ dldp++WpnSkWr+L SapurV1A.0240s0100.3.p 279 VSNAISTKSMFTVSYSPRATHAVFVVPYQKYIKSISNAVCTGTRFKMRFEMDDSPERRRSGVVSGTADLDPYKWPNSKWRCL 360 5799*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-40 | 143 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-44 | 145 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.50E-22 | 151 | 253 | No hit | No description |
Pfam | PF02362 | 2.3E-22 | 153 | 254 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 153 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-23 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-31 | 279 | 360 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MEIDLNHPVT EVEKNAFCTN GDSSSSSNSS SSPISSSIYL ELWHACAGPL TSLPNKGNVV 60 VYFPQGHLEQ LASSSPFPYR NMPNFDLHPQ IFCKVVNVQL LANRENDEVY TRLTLLPRPE 120 VVGQGLEGKE FQELGVDGEG DDASPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP 180 SLDYKQQRPS QELVAKDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL 240 RGEDGELRLG IRRAGRPRNG LPDSVTGKQN SLPSALSLVS NAISTKSMFT VSYSPRATHA 300 VFVVPYQKYI KSISNAVCTG TRFKMRFEMD DSPERRRSGV VSGTADLDPY KWPNSKWRCL 360 MVRWDEDVIS DHQERVSPWE IDTSVSLPPL IIQSSPRLKK LRSGLQAAPP DKPIAGGGGF 420 LDFEESVRSS KVLQGQENDG LLSPVYRRDI VNHPLDFEVQ NKAQQNLILT GIEKAKISEL 480 TRAHPATHTG FTESDRFLKV LQGQEICSLS SIGTLRKPNI GCSSFQMYPG PRPTFYPVAA 540 ESLRSMYFPY GDVFKNEQDP RTQSYAIFSR ENAHSNTSSI QTCVVREEVR KPNHSSEYKK 600 PESISAAPAL CANLRNQKDG FFNGNATGCK LFGFSLNAET SPNSQNTGKR SCTKVSYIRV 660 KTRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-115 | 24 | 382 | 2 | 353 | Auxin response factor 1 |
4ldy_B | 1e-115 | 24 | 382 | 2 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0240s0100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464633.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A3N7FHN9 | 0.0 | A0A3N7FHN9_POPTR; Auxin response factor | ||||
STRING | cassava4.1_001979m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0240s0100.3.p |