PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0240s0100.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 719aa    MW: 79937.9 Da    PI: 7.5414
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0240s0100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.52.9e-24153254199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+
  SapurV1A.0240s0100.2.p 153 FCKTLTASDTSTHGGFSVPRRAAEDCfpsldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVL 238
                             99****************************963.3445679********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   + +++el+++++r+
  SapurV1A.0240s0100.2.p 239 FL--RGEDGELRLGIRRA 254
                             **..449999*****996 PP
2Auxin_resp112.63.8e-37279360182
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                             +++a+stks+F+v Y+Pra+++ Fvv+++k+ k++++ v+ G+Rfkm+fe++ds+err sG+v+g+ dldp++WpnSkWr+L
  SapurV1A.0240s0100.2.p 279 VSNAISTKSMFTVSYSPRATHAVFVVPYQKYIKSISNAVCTGTRFKMRFEMDDSPERRRSGVVSGTADLDPYKWPNSKWRCL 360
                             5799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-40143265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-44145259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-22151253No hitNo description
PfamPF023622.6E-22153254IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14153255IPR003340B3 DNA binding domain
SMARTSM010191.4E-23153255IPR003340B3 DNA binding domain
PfamPF065071.8E-31279360IPR010525Auxin response factor
SuperFamilySSF542771.57E-7644717No hitNo description
PROSITE profilePS5174520.954650718IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEIDLNHPVT EVEKNAFCTN GDSSSSSNSS SSPISSSIYL ELWHACAGPL TSLPNKGNVV  60
VYFPQGHLEQ LASSSPFPYR NMPNFDLHPQ IFCKVVNVQL LANRENDEVY TRLTLLPRPE  120
VVGQGLEGKE FQELGVDGEG DDASPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
SLDYKQQRPS QELVAKDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL  240
RGEDGELRLG IRRAGRPRNG LPDSVTGKQN SLPSALSLVS NAISTKSMFT VSYSPRATHA  300
VFVVPYQKYI KSISNAVCTG TRFKMRFEMD DSPERRRSGV VSGTADLDPY KWPNSKWRCL  360
MVRWDEDVIS DHQERVSPWE IDTSVSLPPL IIQSSPRLKK LRSGLQAAPP DKPIAGGGGF  420
LDFEESVRSS KVLQGQENDG LLSPVYRRDI VNHPLDFEVQ NKAQQNLILT GIEKAKISEL  480
TRAHPATHTG FTESDRFLKV LQGQEICSLS SIGTLRKPNI GCSSFQMYPG PRPTFYPVAA  540
ESLRSMYFPY GDVFKNEQDP RTQSYAIFSR ENAHSNTSSI QTCVVREEVR KPNHSSEYKK  600
PESISAAPAL CANLRNQKDG FFNGNATGCK LFGFSLNAET SPNSQNTGKR SCTKVHKQGS  660
LVGRAIDLSR LNGYSDLLNE LERLFSMEGL LQNPEEGWRI LYTDSENDVM VVGDDPWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-115243822353Auxin response factor 1
4ldy_B1e-115243822353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0240s0100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464633.10.0LOW QUALITY PROTEIN: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A3N7FHN90.0A0A3N7FHN9_POPTR; Auxin response factor
STRINGcassava4.1_001979m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]