PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0239s0120.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 1226aa MW: 134829 Da PI: 5.1439

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0239s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	459	481	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+ F +++L +H+ +H SapurV1A.0239s0120.1.p 459 YKCHKCTLAFDKQDDLLQHLLSH 481 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00384	0.54	196	208	IPR017956	AT hook, DNA-binding motif
Pfam	PF02178	0.12	196	206	IPR017956	AT hook, DNA-binding motif
SMART	SM00384	0.54	231	243	IPR017956	AT hook, DNA-binding motif
Pfam	PF02178	0.12	231	241	IPR017956	AT hook, DNA-binding motif
PROSITE profile	PS50982	9.693	333	409	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	7.52E-8	339	388	IPR016177	DNA-binding domain
Pfam	PF01429	4.2E-6	342	387	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	1.8E-4	343	395	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50157	9.598	459	486	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	459	481	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	461	481	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.5	505	527	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.517	505	532	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	507	527	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1226 aa Download sequence Send to blast
MATATVDPSI CDLQNYLHTE SLPLIDLRHL SQSELLSLSF CSSSLHRLRT DTAEVSTPKI 60 DRSVFNESAG SRKQTFSRLR LAPRNNNASP SSNSTPVAPF QITERQPLDE ENSQIISLLK 120 SLFGSDSNSI ENKNEHYHKL VSVPVIYNDY MRLPSTIASE SQNVSIGICD SSQGGVERLE 180 VNHLISIRTA ESSSKKRKRG RPRKNENVNF DNNDNSELVI SIRTAESSSK KRKRGRPRKN 240 ENVNFDNNDN SELVENKTTA VMCNNMEVEG KKKEEKVNKN GAVVDFVALA NMEDPYGEEL 300 RRRTEGMQLK AEFLGFLEGF EGEWGSMRKK RRIVDASLFG DVLPIGWKLS ICIKNQAGRV 360 WLACTRYISP NGQQFVSCKE VSSYLHSFSG LHDVSQLNSG HMDGRNKLTD EITLSISADH 420 TCKDGKSEND FISYKALPVT CRSIETGGCP VEVQMRNKYK CHKCTLAFDK QDDLLQHLLS 480 HQQTPKRLRC GTSTNEDVII KNGKYECQFC LKLFEERHRF NGHLGNHIKD YLKRLDASSG 540 KTTGKSNEPA LVNIPPGGGK IQTLIEMDRD SDAITFNTKT SGDINSTIPY CELKAITSVE 600 IHCGKMKEDT DAMSAENRVS SEPALLNGDV HRSSDEMDVT KFPTNGTNDL GRKDKSFKNL 660 VAGGARDLTC IGHNNLNQVS PCLIEELNQE RDSNSGLLAP NAKENTSNDD ISKDRHCSSP 720 IDNMVIDGWD TNGKGEPITG CCNSHAAMGE NAAANLREQR TSEGCRVTDM EAGILNFNVV 780 ETMQEKGSKG GLTGIENNMN SVHTDMSNES RFDDMVKSGA NALTSVCRGN NTVLADDNVS 840 NGTIDVANHD QVGSETDLVS QTLTSIKQEK NFKTLTFALF TNGFASKDYG ICNSELEKLK 900 QGRDFGCGSS DNEQSHGVKD IVNGLSCTTV EEDNQQEVKI SCNGELHIAS DDNCTCNEQY 960 ADVGTGTVQK CSLFAGNQST FTAKDNPTGP YSGTVDELKQ KMDSVESVIC PSGSEPVWSV 1020 EKNLQTGFIG SVLEEPKVEN SENPRKDDSG IGFSTHPGPD ESDVISEFMW KNDEESNLLN 1080 DFADTSCQPV QKSGFPPPYD LVSDKGESEF FAEKFGATSG FEGLKWGGMD NMECNLLTSQ 1140 VSSHSDESKV GKYDAVIPQG IDSSIWRAKE DLPFLPKNSS RHHVPAVCVW CGREICQEAL 1200 KSEGQTSTVG FMCACTAKLS GQLNE*

Sequence ? help Back to Top

Protein Sequence Length: 1226 aa Download sequence Send to blast

MATATVDPSI CDLQNYLHTE SLPLIDLRHL SQSELLSLSF CSSSLHRLRT DTAEVSTPKI  60
DRSVFNESAG SRKQTFSRLR LAPRNNNASP SSNSTPVAPF QITERQPLDE ENSQIISLLK  120
SLFGSDSNSI ENKNEHYHKL VSVPVIYNDY MRLPSTIASE SQNVSIGICD SSQGGVERLE  180
VNHLISIRTA ESSSKKRKRG RPRKNENVNF DNNDNSELVI SIRTAESSSK KRKRGRPRKN  240
ENVNFDNNDN SELVENKTTA VMCNNMEVEG KKKEEKVNKN GAVVDFVALA NMEDPYGEEL  300
RRRTEGMQLK AEFLGFLEGF EGEWGSMRKK RRIVDASLFG DVLPIGWKLS ICIKNQAGRV  360
WLACTRYISP NGQQFVSCKE VSSYLHSFSG LHDVSQLNSG HMDGRNKLTD EITLSISADH  420
TCKDGKSEND FISYKALPVT CRSIETGGCP VEVQMRNKYK CHKCTLAFDK QDDLLQHLLS  480
HQQTPKRLRC GTSTNEDVII KNGKYECQFC LKLFEERHRF NGHLGNHIKD YLKRLDASSG  540
KTTGKSNEPA LVNIPPGGGK IQTLIEMDRD SDAITFNTKT SGDINSTIPY CELKAITSVE  600
IHCGKMKEDT DAMSAENRVS SEPALLNGDV HRSSDEMDVT KFPTNGTNDL GRKDKSFKNL  660
VAGGARDLTC IGHNNLNQVS PCLIEELNQE RDSNSGLLAP NAKENTSNDD ISKDRHCSSP  720
IDNMVIDGWD TNGKGEPITG CCNSHAAMGE NAAANLREQR TSEGCRVTDM EAGILNFNVV  780
ETMQEKGSKG GLTGIENNMN SVHTDMSNES RFDDMVKSGA NALTSVCRGN NTVLADDNVS  840
NGTIDVANHD QVGSETDLVS QTLTSIKQEK NFKTLTFALF TNGFASKDYG ICNSELEKLK  900
QGRDFGCGSS DNEQSHGVKD IVNGLSCTTV EEDNQQEVKI SCNGELHIAS DDNCTCNEQY  960
ADVGTGTVQK CSLFAGNQST FTAKDNPTGP YSGTVDELKQ KMDSVESVIC PSGSEPVWSV  1020
EKNLQTGFIG SVLEEPKVEN SENPRKDDSG IGFSTHPGPD ESDVISEFMW KNDEESNLLN  1080
DFADTSCQPV QKSGFPPPYD LVSDKGESEF FAEKFGATSG FEGLKWGGMD NMECNLLTSQ  1140
VSSHSDESKV GKYDAVIPQG IDSSIWRAKE DLPFLPKNSS RHHVPAVCVW CGREICQEAL  1200
KSEGQTSTVG FMCACTAKLS GQLNE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0239s0120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451193.1	0.0	uncharacterized protein LOC7461780 isoform X2
TrEMBL	A0A3N7FIC7	0.0	A0A3N7FIC7_POPTR; Uncharacterized protein
STRING	POPTR_0002s09790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5810	17	19

Link Out ? help Back to Top
Phytozome	SapurV1A.0239s0120.1.p