PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0237s0250.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 243aa MW: 27489.1 Da PI: 4.9279 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.3e-29 | 31 | 91 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++eitY+g+H++ SapurV1A.0237s0250.2.p 31 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTIFEITYRGTHTCA 91 8***************************98899*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.033 | 25 | 88 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-29 | 27 | 91 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 29 | 91 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-40 | 30 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-27 | 31 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MFSDLDCRKT APRWTDHVRV SPENGLEGPH DDGYSWRKYG QKDILGAKYP RSYYRCTYRN 60 TQNCWATKQV QRSDEDPTIF EITYRGTHTC AHGNQSIPSP SSPEKQEKKQ KNTINNYQQQ 120 QSQQALYNFQ NSLKVITEDL DNKEMVSPFS FPSAYGCTEN VGSYSPSFIS PATPEPAHYS 180 VSPFQINNFL GAHDSQHLEQ DFAEIISANT SATNSPIVDL DFALDQVELD PNFPFDTPGF 240 FS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-18 | 32 | 88 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 1e-18 | 32 | 88 | 18 | 74 | Disease resistance protein RRS1 |
6ir8_A | 1e-18 | 31 | 90 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0237s0250.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377441 | 0.0 | GQ377441.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304549.1 | 1e-155 | probable WRKY transcription factor 41 | ||||
TrEMBL | B9GXG9 | 1e-153 | B9GXG9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s13840.1 | 1e-154 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 3e-57 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0237s0250.2.p |