PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0237s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 343aa MW: 38408.3 Da PI: 5.0922 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.4e-29 | 131 | 191 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++eitY+g+H++ SapurV1A.0237s0250.1.p 131 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTIFEITYRGTHTCA 191 8***************************98899*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.033 | 125 | 188 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-28 | 127 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-26 | 129 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-40 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-27 | 131 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MESGWLWEQK TLITELIQGM ELAKQLRTHL NATSSVESRD ELVQRILASY EKALLILSWG 60 RSMGQPQSVG VSAGVPESPI SINGSPRSDE FDGGVKDNQG YNEGSKKRKT APRWTDHVRV 120 SPENGLEGPH DDGYSWRKYG QKDILGAKYP RSYYRCTYRN TQNCWATKQV QRSDEDPTIF 180 EITYRGTHTC AHGNQSIPSP SSPEKQEKKQ KNTINNYQQQ QSQQALYNFQ NSLKVITEDL 240 DNKEMVSPFS FPSAYGCTEN VGSYSPSFIS PATPEPAHYS VSPFQINNFL GAHDSQHLEQ 300 DFAEIISANT SATNSPIVDL DFALDQVELD PNFPFDTPGF FS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-18 | 131 | 190 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0237s0250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377441 | 0.0 | GQ377441.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022522.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | B9GXG9 | 0.0 | B9GXG9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s13840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 5e-76 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0237s0250.1.p |