PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0235s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 687aa    MW: 76243.6 Da    PI: 6.6793
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0235s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.6e-16331390155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+++GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  SapurV1A.0235s0250.1.p 331 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 390
                             789******************988886678446*************************98 PP
2AP245.22.4e-14435484355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0235s0250.1.p 435 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 484
                             9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-21331398No hitNo description
SuperFamilySSF541713.14E-16331400IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-15332399IPR001471AP2/ERF domain
SMARTSM003806.6E-29332404IPR001471AP2/ERF domain
PfamPF008471.6E-12332390IPR001471AP2/ERF domain
PROSITE profilePS5103218.782332398IPR001471AP2/ERF domain
PRINTSPR003672.1E-5333344IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-17433492IPR016177DNA-binding domain
CDDcd000181.58E-24433491No hitNo description
Gene3DG3DSA:3.30.730.103.5E-18434491IPR001471AP2/ERF domain
SMARTSM003808.7E-33434498IPR001471AP2/ERF domain
PROSITE profilePS5103218.966434492IPR001471AP2/ERF domain
PfamPF008471.1E-9435484IPR001471AP2/ERF domain
PRINTSPR003672.1E-5474494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MKSMNNDDDS NSHNANWLGF SLSPQMKMEV PSGANHHHQT QSPSAAIPTA IPSGFFHSQI  60
PQLNYGIYYG VDDQSENGGF YSPLPVMPLK SDGSLCMMDA LTRTQPQGEA AMVTTSTPKL  120
EDFFGGATMG THHYESNDRA DMALSLDSSP SMYFQQDPDH EPDSQNSLNH LQQNPRQQQY  180
HHIQLQHYPY YSYFRNNEML VGEEAKQMAQ ASDCGLRLPN MGNEGITGMK NWVSRNYQGN  240
RAMETKMLRS MVENGGESGP NISAMTYGDL QCLSLSMSPG SQSSCVTGSL QVSPSVADYA  300
VMETKKRGPE KVDQKQIVHR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQS  360
RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQKEIEEMR DMSRQEYVAH  420
LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI  480
KFRGVNAVTN FVITRYDVER IMASSTLLAG ELARRNKDIG PGDDTSTNHS IPSTHNSNGD  540
SLASQKNSEN ESDWKMALYQ SSQQLDQKAS NVMDNYKTQA FLLSPENVIG FDCMSSAQQH  600
ELEDPSKMGA HVSNASSLVT SLSSSREESP DRASLPMLFG MPPSAASKLF ASPTSDVNSW  660
IPAASAQLRP AVSLPHVPVF AAWTDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0235s0250.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2105550.0AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440363.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-145CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K1XNS60.0A0A2K1XNS6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-135AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]