PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0235s0230.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 478aa MW: 51922.6 Da PI: 7.9439 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.9 | 2e-24 | 103 | 147 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ SapurV1A.0235s0230.3.p 103 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVES 147 79****************************************986 PP | |||||||
2 | QLQ | 57.2 | 5e-20 | 33 | 68 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ a++PvP++L+ +++k SapurV1A.0235s0230.3.p 33 SFTPSQWMELEHQALIYKYITARVPVPSNLIIPLKK 68 8******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-11 | 32 | 68 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.8E-14 | 33 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.187 | 33 | 68 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.54 | 103 | 147 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.7E-21 | 104 | 146 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MLQARNVFCY VAGYDTGALN AGMHGTFTGV RGSFTPSQWM ELEHQALIYK YITARVPVPS 60 NLIIPLKKSI YPYGLPGSST GSFPHNSLGW SAFHLVYPGN NTDPEPGRCR RTDGKKWRCS 120 RDAVADQKYC ERHINRGRHR SRKPVESQTG HAATGTASSN VLPMSNSTSK LVISSGGASN 180 GIAMTMQQQF KILQPAAANS SADADVNRAQ DARNISMMSS TINQKSDESS FSVPKQDFSM 240 EQCSQTEFGF VSSDSLLNPS QKSSYNNSKP NESFLNFNDK ESQDQHAPRH FINDWPKDQS 300 NRSVICWPEE LKSDWTQLSM SIPMASSDFS SSSSSPTHEK LALSPMRLSC EFDHVQMGLR 360 VSIDHNESSQ KQTNWIPISW GTSIGGPLGE VLTTNTSHAD SCKSSSALSL LREGCDGSPQ 420 LRSSPTGVLQ KSAFCSLSNS SSGSSPRAES KKNNDTASLY EDVLGSIIAS SSPIPSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0235s0230.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 3e-44 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 3e-44 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007851.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
Swissprot | O81001 | 1e-110 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | B9IBM4 | 0.0 | B9IBM4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s00780.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 7e-98 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0235s0230.3.p |
Publications ? help Back to Top | |||
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