PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0235s0230.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 599aa MW: 65431.5 Da PI: 8.1701 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.5 | 2.7e-24 | 224 | 268 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ SapurV1A.0235s0230.2.p 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVES 268 79****************************************986 PP | |||||||
2 | QLQ | 56.8 | 6.6e-20 | 154 | 189 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ a++PvP++L+ +++k SapurV1A.0235s0230.2.p 154 SFTPSQWMELEHQALIYKYITARVPVPSNLIIPLKK 189 8******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-11 | 153 | 189 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.187 | 154 | 189 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-14 | 154 | 187 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.54 | 224 | 268 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.7E-21 | 225 | 267 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MDFGVLGLEG LVGPKTSSEA PSHVSPPETK QKILGSVSSK QERSASSAQD DYWRTSKMPK 60 NNDFSVTKTM SLHQPASLLR SNYMFSDDSL QQEHMMSFSS PRPETTPFLR RDGGFVERST 120 QNHTASSLPY YQNTASSYIR SAGMHGTFTG VRGSFTPSQW MELEHQALIY KYITARVPVP 180 SNLIIPLKKS IYPYGLPGSS TGSFPHNSLG WSAFHLVYPG NNTDPEPGRC RRTDGKKWRC 240 SRDAVADQKY CERHINRGRH RSRKPVESQT GHAATGTASS NVLPMSNSTS KLVISSGGAS 300 NGIAMTMQQQ FKILQPAAAN SSADADVNRA QDARNISMMS STINQKSDES SFSVPKQDFS 360 MEQCSQTEFG FVSSDSLLNP SQKSSYNNSK PNESFLNFND KESQDQHAPR HFINDWPKDQ 420 SNRSVICWPE ELKSDWTQLS MSIPMASSDF SSSSSSPTHE KLALSPMRLS CEFDHVQMGL 480 RVSIDHNESS QKQTNWIPIS WGTSIGGPLG EVLTTNTSHA DSCKSSSALS LLREGCDGSP 540 QLRSSPTGVL QKSAFCSLSN SSSGSSPRAE SKKNNDTASL YEDVLGSIIA SSSPIPSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0235s0230.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 3e-44 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 3e-44 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320668.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | B9IBM4 | 0.0 | B9IBM4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s00780.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-106 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0235s0230.2.p |