PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0234s0050.8.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 297aa    MW: 31365.8 Da    PI: 7.0107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0234s0050.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-111255445
                            S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                            WT e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++ 
  SapurV1A.0234s0050.8.p 12 WTREQDKAFENALATYPEDtsdRWEKIAADVP-GKTLEEIKHHYE 55
                            ********************************.**********96 PP
2Myb_DNA-binding422.2e-13122166347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  SapurV1A.0234s0050.8.p 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                             6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.078762IPR017884SANT domain
SMARTSM007173.0E-10860IPR001005SANT/Myb domain
SuperFamilySSF466891.1E-111064IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-51155IPR009057Homeodomain-like
CDDcd001678.38E-101258No hitNo description
PfamPF002496.1E-91255IPR001005SANT/Myb domain
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.17E-16117172IPR009057Homeodomain-like
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
CDDcd001678.46E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSVDEGGSGS LWTREQDKAF ENALATYPED TSDRWEKIAA DVPGKTLEEI KHHYELLVED  60
ISQIEAGCVP LPCYSSSPEG STGHAGDEGT GKKGGHLGHH NSESNHGSKA SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN GDIATPQGPI TGQTNGSAVA GSSGKAAEQP PPHPAGPPGV GIYGPPTIGQ  240
PIGGPLVSAV GTPVNLSASA HMAYGVRASV TGAMVPGAPM NMGPMTYPMP PTTTHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-20777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0234s0050.8.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175840.0AC217584.1 Populus trichocarpa clone POP021-G16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310052.20.0transcription factor SRM1
RefseqXP_006380485.10.0transcription factor SRM1
RefseqXP_006380486.10.0transcription factor SRM1
RefseqXP_006380487.10.0transcription factor SRM1
RefseqXP_024461312.10.0transcription factor SRM1
SwissprotQ9FNN61e-133SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2K1ZQU30.0A0A2K1ZQU3_POPTR; Uncharacterized protein
STRINGcassava4.1_012921m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-108MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]