PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0232s0150.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 484aa MW: 52426.4 Da PI: 8.2778 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.3 | 1.2e-37 | 89 | 242 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssss 69 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++++ ai el+++ + SapurV1A.0232s0150.1.p 89 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKASQDAINELPSLnhcfpdtpkqlsdekkssdG--- 172 689*************************************************************88765544444333222221... PP TCP 70 aseceaesssssasnsssg.....................kaaksaakskksqksaasalnlak....esrakarararertrekmr 131 + + +++a+s+ s++s+ s l+l++ sr+kar+rarert++++ SapurV1A.0232s0150.1.p 173 ------------------TeqgfdsadveledtnfrqnqnLSLSKSACSSTSETSKGSGLSLSRsdirYSREKARERARERTAKEKE 241 ..................01122233344444444444545555556666667777767777764344677*********9988766 PP TCP 132 i 132 + SapurV1A.0232s0150.1.p 242 K 242 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-44 | 90 | 242 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.019 | 91 | 149 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.278 | 222 | 240 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MEAEEIQRQP RKFSRVGGNG IRDSSRIAQK GNGTDHQYPD DEEDGVLKRT SSSNGACGGI 60 NATGVDGGTF TGLRAWHHSS RIIRVSRASG GKDRHSKVWT SKGLRDRRVR LSVTTAIQFY 120 DLQDRLGYDQ PSKAVEWLIK ASQDAINELP SLNHCFPDTP KQLSDEKKSS DGTEQGFDSA 180 DVELEDTNFR QNQNLSLSKS ACSSTSETSK GSGLSLSRSD IRYSREKARE RARERTAKEK 240 EKEYDSRMAH HSNINPISQS STFTELLTGG IGGASNNSNN NSTGSPTGSH EANNLFQKAA 300 AARQWPSIPM DYFGSGLLGA SSSRSTHHSS GFPGQIQLGN SIPQAMTMSI PPFCLSGESH 360 QEHLQHFPFV SDHLIPVAAT AQPPASSVDY NLNFTISSGL AAGFNRGTLQ SNSSSPSLLP 420 HLQRLSTSST IDGSTTNLPF FIGAATPQAM ESHHHHHHQF PPGLQLCYGD GTRHSDHKGK 480 GKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-24 | 96 | 150 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-24 | 96 | 150 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0232s0150.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014905.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_011014906.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_011014907.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
TrEMBL | A0A2K1YHA5 | 0.0 | A0A2K1YHA5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s02350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0232s0150.1.p |