PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0230s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 332aa    MW: 36168.2 Da    PI: 6.0644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0230s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10241284755
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  SapurV1A.0230s0340.1.p 241 IAAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 284
                             5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-14235294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-11236288No hitNo description
Gene3DG3DSA:4.10.280.104.8E-12236291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-12240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7242284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALVKDRMGL VQACSFYGNV TGDLSPLGPN YGFDEEGDRN FEKNGGLMIK NLAMISPSPP  60
SLGSPSRENS GELVFQATGN QVEEAHSLIN FKGTGFDSII QANGSLISFE QSSRVSQTSS  120
HRDDYSAWEG NLSCDYHWDQ INPKCSTNPR LIEDLNSYQR ASSFNSITSS AEKENHGDWL  180
YSTESTILTD SNPDSAAPDA ISSHKRPNMG ESMQALKKQR DGAEKKPKPK SAGPAKDPQS  240
IAAKNRRERI SERLKILQDL VPNGSKVDLV TMLEKAISYV KFLQLQVKVL ATDEFWPAQG  300
GKAPDISQVK GAIDAILSSQ TKDRNSNSSS M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0230s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383310.20.0putative transcription factor bHLH086
TrEMBLA0A2K1X7630.0A0A2K1X763_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-70RHD SIX-LIKE 1