PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0226s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 481aa    MW: 55310 Da    PI: 5.66
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0226s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.6e-2489188186
                trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                             +Wt+++v+ Li a+ +++++++++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++
  SapurV1A.0226s0090.1.p  89 KWTDNMVRILIMAVFYIGDEVGSEGsdpigkkkpgglaQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtAC 175
                             7*****************99997533666777888888**********************************************55* PP

                trihelix  74 essstcpyfdqle 86 
                             +++++ +++d +e
  SapurV1A.0226s0090.1.p 176 GVVENQSLLDTME 188
                             *********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2087213No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLGLELPLHQ QQNPQNPHHL HHPQIVAYAH HESDHQHSQQ SAKHAYPFAS STKPKQLLSP  60
LSNEDEPSFT GDDSTTDGKR KISPWQRMKW TDNMVRILIM AVFYIGDEVG SEGSDPIGKK  120
KPGGLAQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK RYKRVNDILG KGTACGVVEN  180
QSLLDTMELS PKMKDEVRKL LNSKHLFFRE MCAYHNSCSH APNGVASVIN HSPEMATDPS  240
HAQHQQATQQ QHQRCSHSTE NAQVLTNSRT ETEGSKMARM ARNEEDDHDE SEEDEDDFAE  300
DEEEEDDDDD ERDDDEEDYE DNGDEVEGNS RHQNGHGHGE EDDHDEKSSR KRPRKEVFSA  360
TTSLMQQLNG EIMSVLRDGG KSSREKNQWM KLKLMQLEEQ QVSYHCQAYE LEKQRLKWVK  420
FSSKKERDME RAKLENERRR LENERMVLIV RKKELELLDT QQQQLQLPSN KRSDPPSIAG  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0226s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018864.10.0PREDICTED: 46 kDa FK506-binding nuclear protein-like
TrEMBLA0A2K2A0Q80.0A0A2K2A0Q8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-73sequence-specific DNA binding transcription factors