PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0226s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 493aa    MW: 53981.7 Da    PI: 6.6489
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0226s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-16106187186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +W++  + +L++a+ e+ ++l+rg+l++ +Weev++ +++   ++s +qCk+k +nl+kryk ++++  ++ s sss++p+f+++e
  SapurV1A.0226s0070.1.p 106 EWSDVAIGCLLDAYLEKFTQLSRGNLRGRDWEEVAAMVKQ---SKSVEQCKNKVDNLKKRYKLERHRITSG-SISSSHWPWFQKME 187
                             5***********************************9988...589************************9.77888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-17104189No hitNo description
Gene3DG3DSA:3.40.1160.104.6E-69244485IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.704251486IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.49E-55252485IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.43E-117254486No hitNo description
PfamPF006968.3E-24255465IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MASSCDEDFS LLGDDNHHHH ILYRYPTKST PIHAQPESIL HLEGEEEDRE DNNETDSAFE  60
DVNPYSDNEA SKRSEREGKI DGGGTPYNIY KRGRSGGGEY RKDREEWSDV AIGCLLDAYL  120
EKFTQLSRGN LRGRDWEEVA AMVKQSKSVE QCKNKVDNLK KRYKLERHRI TSGSISSSHW  180
PWFQKMEDIV GNSLPIKVAP PAPAPADEDN GNGGSGASSV SVPRQSKRYA NTIASPVGQT  240
NNMKPKSLSK TRWRRVILKI SGVALAGTGP NNIDPKVMTL IAREVALACQ LGLEIAIVVG  300
ARNFFCGDTW LSITGSHRRT AYQIGMMASV MNSILLQSAL EKIGVQTRVQ TAFAMQEVSE  360
PYSRQRAIRH LEKGRVVIFG GIGAGTGNPL FSTDTAAALQ ASEIHAEAVL KGTNVDGVYD  420
CHSPDSNVIF ENISFRDLVS RGVTSMDIMA LTCCEENNIP VVVFNLLEPG NISKALRGEQ  480
VGTLIDQTGR IG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A5e-612474853239Uridylate kinase
3ek5_B5e-612474853239Uridylate kinase
3ek5_C5e-612474853239Uridylate kinase
3ek5_D5e-612474853239Uridylate kinase
3ek5_E5e-612474853239Uridylate kinase
3ek5_F5e-612474853239Uridylate kinase
3ek6_A5e-612474853239Uridylate kinase
3ek6_B5e-612474853239Uridylate kinase
3ek6_C5e-612474853239Uridylate kinase
3ek6_D5e-612474853239Uridylate kinase
3ek6_E5e-612474853239Uridylate kinase
3ek6_F5e-612474853239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0226s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4751284e-68AM475128.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048092.27, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018866.10.0PREDICTED: uncharacterized protein LOC105121779 isoform X1
TrEMBLU5GCJ80.0U5GCJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein