PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0225s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 306aa    MW: 33234.5 Da    PI: 8.2055
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0225s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-3276133260
             ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                             + vrY+eClkNhAas+Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHR+e e e
  SapurV1A.0225s0050.1.p  76 KMVRYRECLKNHAASMGGTATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRKEIEGE 133
                             679**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2578133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2978130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3179130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2680129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-29215287IPR009057Homeodomain-like
SuperFamilySSF466897.59E-19224288IPR009057Homeodomain-like
TIGRFAMsTIGR015659.2E-27226282IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MELSSHEGGI PIPLNSTFGG AAHGHGHGHL ILHDHPAVPH NHNIISSAAP QIPISNNGGP  60
SLTAASIDDS HVPYKKMVRY RECLKNHAAS MGGTATDGCG EFMPSGEEGS IEALTCSACN  120
CHRNFHRKEI EGEQGSCTGD HCYHINNPHF SRVNGRKVIL GHHKSILAPA EALCYPTAAG  180
ALIPSRSSAP HHQMIMSYNM GSIPSESDEQ EDGSGAMMAR PAQLMKKRFR TKFSQEQKEK  240
MLNFAEKVGW KLQKQEETVV QQFCQEIGVK RRVLKVWMHN NKHSLAKMNP STTTATATTT  300
TTTTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-242272841875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0225s0050.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455448.11e-174zinc-finger homeodomain protein 4
SwissprotQ9M9S04e-77ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2K2AZ041e-172A0A2K2AZ04_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23860.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-74homeobox protein 31