PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0224s0160.8.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TALE

Protein Properties

Length: 677aa MW: 73380.6 Da PI: 6.9372

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0224s0160.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.5e-09	374	411	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + SapurV1A.0224s0160.8.p 374 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 411 554459******************************88 PP
2	BELL	126.1	1.3e-40	238	309	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi SapurV1A.0224s0160.8.p 238 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 309 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.2E-67	162	307	IPR006563	POX domain
Pfam	PF07526	2.1E-51	167	306	IPR006563	POX domain
PROSITE profile	PS50071	12.147	352	415	IPR001356	Homeobox domain
CDD	cd00086	5.46E-12	355	416	No hit	No description
SMART	SM00389	2.3E-9	355	419	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	356	422	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	358	421	IPR009057	Homeodomain-like
Pfam	PF05920	6.1E-18	372	411	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MATYFHGNPD FQAAAASAEG LQTLVLMNPT YVQYSNIPPP PPSNNLVFLN AAASNSLSAT 60 PHLSCHAPSN TQQFVGIPLD PNSHDSSTLH GLMPRIHYNL YNPIDPPPTA RDTPRAQQGL 120 SLSLSSQQQG CFGSQVQSVS GEDIRVSGGS VSSGSGVTNG VLGMQGVLLS SKYLKAAQEL 180 LDEVVSVNNN DIKSELSKKS NGISSNTSNK VAGGSLAGEG SGGGEASGKR GPELSTAERQ 240 EIQMKKAKLI SMLDEVEQRY RQYHHQMQIV ISSFEQAAGI GSAKTYTALA LKTISKQFRC 300 LKDAITGQIK ASNKSLGEED CLGEKIEGSR LKFVDHHLRQ QRALQQLGMI QHNAWRPQRG 360 LPERSVSVLR AWLFEHFLHP YPKDSDKLML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM 420 YTEEIKEQEQ DGSEDKTSKS DHNEDSASRS ALQEKGSAGE NQTRSFKSLD NSPDAPSAIS 480 LPAASTSPVG GNVRNQSGFS FIGSSELEGI TQRSPKKPRS NDFIQSSSSV PSINMDIKPG 540 HEANNEQVSL KFGSERQSRD GYSFMGGQTN FIGGFGQYPI GEIGRFDGEQ FTPRFSGNGV 600 SLSLGLPHCE NLSLSGTHQT FLPNHDIQLG RRVEIGEPNE FGSINTSAPH SSTAYENIDI 660 QNGKRFIAQL LPDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MATYFHGNPD FQAAAASAEG LQTLVLMNPT YVQYSNIPPP PPSNNLVFLN AAASNSLSAT  60
PHLSCHAPSN TQQFVGIPLD PNSHDSSTLH GLMPRIHYNL YNPIDPPPTA RDTPRAQQGL  120
SLSLSSQQQG CFGSQVQSVS GEDIRVSGGS VSSGSGVTNG VLGMQGVLLS SKYLKAAQEL  180
LDEVVSVNNN DIKSELSKKS NGISSNTSNK VAGGSLAGEG SGGGEASGKR GPELSTAERQ  240
EIQMKKAKLI SMLDEVEQRY RQYHHQMQIV ISSFEQAAGI GSAKTYTALA LKTISKQFRC  300
LKDAITGQIK ASNKSLGEED CLGEKIEGSR LKFVDHHLRQ QRALQQLGMI QHNAWRPQRG  360
LPERSVSVLR AWLFEHFLHP YPKDSDKLML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM  420
YTEEIKEQEQ DGSEDKTSKS DHNEDSASRS ALQEKGSAGE NQTRSFKSLD NSPDAPSAIS  480
LPAASTSPVG GNVRNQSGFS FIGSSELEGI TQRSPKKPRS NDFIQSSSSV PSINMDIKPG  540
HEANNEQVSL KFGSERQSRD GYSFMGGQTN FIGGFGQYPI GEIGRFDGEQ FTPRFSGNGV  600
SLSLGLPHCE NLSLSGTHQT FLPNHDIQLG RRVEIGEPNE FGSINTSAPH SSTAYENIDI  660
QNGKRFIAQL LPDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	361	418	1	58	Homeobox protein Meis1
4xrs_B	3e-16	361	418	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0224s0160.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT028867	0.0	CT028867.1 Poplar cDNA sequences.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443237.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443238.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443239.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443240.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443241.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443242.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_024443243.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	B9IIL1	0.0	B9IIL1_POPTR; Uncharacterized protein
STRING	POPTR_0016s07040.3	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-167	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0224s0160.8.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]