PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0222s0350.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 401aa    MW: 43704.6 Da    PI: 6.6827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0222s0350.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33258315260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  SapurV1A.0222s0350.3.p 258 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 315
                             8****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-29244316IPR003657WRKY domain
SuperFamilySSF1182901.7E-25252316IPR003657WRKY domain
PROSITE profilePS5081124.019252316IPR003657WRKY domain
SMARTSM007743.9E-36257315IPR003657WRKY domain
PfamPF031061.7E-25258314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAASSGSLDT SGNSHPQSSS NYFSFSTNSS NHYPFMTSSS FTDLLVSNDE KTISSTTRNS  60
KLADRIAERT GSGVPKFKSI PPPSLPLSPP PVSPSYYFAI PPGLSPTELL DSPVLINPSN  120
ILPSPTTGSF PGQGLNWKSS SGNTQKNVKK EDGNFSDFSF QQPARPSTTS SAMFQSSNST  180
VQPGQQQTWG FQEPAKQDEF VSGKSNMVKM EYNSNSIKNF SPEIAAIQAN PQSNNGFQSD  240
YGNQQQQYQS VREQKRSDDG YNWRKYGQKQ VKGSENPRSY YKCTFPSCPT KKKVERSLDG  300
QITEIVYKGS HNHPKPQSTR RSSSTGSAAS NLAMIPAPNS NSNEIQDQSY VTHCSGQMDS  360
SVATPENSSI SIGDDDFDSQ RSKSMGGDDL EEDEPEAKRW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-162583161574WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0222s0350.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1473030.0EF147303.1 Populus trichocarpa clone WS0122_H07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319959.10.0probable WRKY transcription factor 25
TrEMBLC9DHZ00.0C9DHZ0_9ROSI; WRKY transcription factor 1
STRINGPOPTR_0013s14960.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.18e-40WRKY DNA-binding protein 33