PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0220s0460.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 306aa    MW: 33369.4 Da    PI: 6.8024
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0220s0460.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085.1e-342175155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  SapurV1A.0220s0460.4.p 21 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 75
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3031878IPR017930Myb domain
SuperFamilySSF466896.99E-182075IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-322076IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-252176IPR006447Myb domain, plants
PfamPF002491.2E-92374IPR001005SANT/Myb domain
PfamPF143791.6E-23104150IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTMDPINGGS SLNNNPSHAS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG  60
LTIYHVKSHL QKYRLAKYLP DSSSDADKKE TGDMISNLDG SSGMQITEAL KLQMEVQKRL  120
HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLEDVPG SGIAAPVSGD NCPESDSKTD  180
PATPAPTSES PLQDKAAKER APAKSLSIDE SFSSQHEPLT PDSRCNAGSP TESPRGERSM  240
KKQRVSMGVT YGKPELVLAH QILESSLNSY PQPHSAFLSR EQFDPSSGLS TGSKDQMEKV  300
TGSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-232178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-232178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-232178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-232178158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0220s0460.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248470.0CU224847.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443123.10.0myb family transcription factor PHL7 isoform X2
SwissprotQ9SJW01e-134PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2K1X8G90.0A0A2K1X8G9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00310.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-120G2-like family protein