PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0219s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 328aa    MW: 37164.6 Da    PI: 8.9697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0219s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05167186120
                             EEETTTTEEESSHHHHHHHH CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                             + C++C+k+F+r  n++ H+
  SapurV1A.0219s0040.1.p 167 FACSICSKTFNRYNNMQMHM 186
                             78*****************9 PP
2zf-C2H211.20.0011253273323
                             ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                             C +C+k F  k + ++H +++
  SapurV1A.0219s0040.1.p 253 CRKCSKAFAVKGDWRTHEKNC 273
                             *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-5158190No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5167186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45167194IPR007087Zinc finger, C2H2
SMARTSM003550.17167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SMARTSM00355190214246IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5237271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.33E-6237271No hitNo description
SMARTSM00355120251271IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGLRSYHVED SNLCFQAPNF IEWLKPSPSS PSSSSSSLSS VTTQQVQPAN PMSILKLASF  60
FPPRQKESTK ETIQCLPLLN RLTEKKTLKE EEDMEMQEST VGVKREKVTV ALHIGLPNSG  120
DSEVETEVFE LKEEISMKKK LQGYSFNSES RFWIPTPAQI LVGPMQFACS ICSKTFNRYN  180
NMQMHMWGHG SEFRKGPDSL KGTQPAAMLR LPCYCCALGC KNNINHPRAK PLKDFRTLQT  240
HYKRKHGAKP FLCRKCSKAF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK  300
GHSPHPSLEG FEDEKECITG SEDEFAR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0219s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045037.10.0PREDICTED: zinc finger protein WIP3 isoform X1
SwissprotQ9SGD11e-131ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9HQX30.0B9HQX3_POPTR; C2H2 family protein
STRINGPOPTR_0009s14590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-124WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]