PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0217s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 337aa MW: 38408.3 Da PI: 9.1418 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.5 | 1.1e-15 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i n++ r +t+ kR++g+ KKA E +LC+++++vii++++++ SapurV1A.0217s0080.1.p 11 ICNERSRMITYHKRKKGLTKKAREFQILCGVDACVIILGPKQN 53 7799***********************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.801 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-14 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-18 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.42E-19 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 1.9E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-18 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGRGKLTMEL ICNERSRMIT YHKRKKGLTK KAREFQILCG VDACVIILGP KQNNHPVDVE 60 TWPTDLVEVR RIINRFRSEG ADRKKTQDLS YFFEARKKKV DDEIAKLRKA CMQAKFPAWD 120 NRLNLLSLDQ LRELAGIFES KLDVARGWLL KLKGNPFSME DSESGINKSS LMACGNLANA 180 FLPKNIEFEG LNQQQPLPCA KPVDMSLATY YPSDQLQQML PFNGDPINSP MLMLMMNHED 240 FGQFGGLSSS SIMKSTVQYN YDPTAEMIGK MMMFNNPRAH SVSYHGPSRQ PVFPYRQGPM 300 VQNVSSQLCI PQFSYFSDAN EFEMSRKENL AMKTHY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 98 | RKKTQDLSYFFEARKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0217s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC184082 | 0.0 | AC184082.2 Populus trichocarpa clone Pop1-55P2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044609.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL19 | ||||
TrEMBL | A0A2K2C1G8 | 0.0 | A0A2K2C1G8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0217s0080.1.p |