PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0215s0260.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 855aa MW: 94272 Da PI: 6.3505 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.5 | 1.4e-19 | 330 | 429 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+l+ sd+++ grlvlpk +ae++ ++++ e++ l+++d +gr+W++++++ +++s++yvl+ G ++ +Lk+gD+++F+ SapurV1A.0215s0260.1.p 330 FEKILSASDAGRIGRLVLPKACAEAYfpSISQSEGIPLKIQDIKGREWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLKAGDTITFS 415 99**************************777778999***************9989999999***9.******************** PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 +++ +++lv+++++ SapurV1A.0215s0260.1.p 416 RID-PGGKLVMGFRK 429 887.77777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-30 | 326 | 436 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-21 | 327 | 431 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.01E-24 | 328 | 429 | No hit | No description |
SMART | SM01019 | 3.3E-23 | 330 | 430 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.321 | 330 | 431 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-17 | 330 | 429 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.655 | 560 | 610 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.2E-9 | 565 | 607 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MGTKICMNAS CQTTTTHEWK RGWPLRSGGH ALLCFNCGSA YEDSLFCDTF HSEEPGWREC 60 NICTKRLHCG CIASKFLLEL LDYGGVGCSS CARSSRLHSI QCDEIPNGFG SLTRNNAGDM 120 ESIPVESTVA ANDNDEGGLA QLCRLIEASE PSLLHPSERA ITNGCLGQFR QEEIRHAIGD 180 IGTGFSNMTL PSIGSSKFTK PDNMSSLLDM GDMHSSLSEP SLSMALGAPS GTTNFAPFPG 240 GAVEGREQSK TPSSFQQGQR SRPILPKPSK LGLLASSENN KGSASELRIA RPPAEGRGKN 300 QLLPRYWPRI TDQELQQLSG DLNSNIVPLF EKILSASDAG RIGRLVLPKA CAEAYFPSIS 360 QSEGIPLKIQ DIKGREWTFQ FRFWPNNNSR MYVLEGVTPC IQSMQLKAGD TITFSRIDPG 420 GKLVMGFRKS TNNNEDAQDA QASGLLDGTA SGETSLSADG YIGWNNSENH GGGINGDLLQ 480 QITAPTEKKR TRNIGPKSKR LLMHSEDAME LRLTWEEAQD LLRPPPSVNP TVVTIEDHEF 540 EEYDEPPVFG KRTIFTSRSP GRQEQWAQCD DCSKWRKLPV DALLPPKWTC SENAWDSSRC 600 ICSVSEEMTP KDLDNLLRVS KDFKKRRILE SQKRFQDCEP SGLDALASAA VLGDNIDDSG 660 EPSVGATTKH PRHRPGCTCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMLRKKKRQS 720 EREAETSQKD NMDRKEPEVN GTMSHEVLHI NNPETAVSQS KMQTEKPEIS AGQIDLNCHP 780 NREDMPLDMP GLTTMNLVDM GNTHLDSYIK ENCLSSLVWD QQGDQAQHSG ESLRRLSDEA 840 FLASLGWTHE SRRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 2e-71 | 308 | 432 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 2e-71 | 308 | 432 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 2e-71 | 308 | 432 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 2e-71 | 308 | 432 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 2e-71 | 308 | 432 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 2e-71 | 308 | 432 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 2e-71 | 308 | 432 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 704 | 715 | KRRFKTLMLRKK |
2 | 704 | 717 | KRRFKTLMLRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0215s0260.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024447572.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A2K1WTD3 | 0.0 | A0A2K1WTD3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s15070.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10323 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0215s0260.1.p |