PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0215s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bZIP
Protein Properties Length: 386aa    MW: 41654.1 Da    PI: 6.296
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0215s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.3e-10187243561
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                             kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +     l s
  SapurV1A.0215s0230.1.p 187 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 243
                             9****************************************9998877666655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-16183247IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.611185248IPR004827Basic-leucine zipper domain
PfamPF001709.9E-9187244IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.1E-10187242No hitNo description
SuperFamilySSF579593.3E-10187238No hitNo description
CDDcd147032.00E-23188237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSSSMETQDP QSKPPQNSDP SKPHNPNPTT PPASSMFNSI RGGALHRRAR SEMSFRLPED  60
MTMMMMDIHP SDQINGGNGG GGGGGGGSST GSLEEIGSED DLFSTYIDVD KLTGDNSGNG  120
TGGGIQNDND NNMNGEKAGV SGSGTSRPKH RYSNSVDGSV FGGGEVMEAK KAMPPDKLAE  180
LWTIDPKRAK RILANRQSAA RSKERKARYI LELERKVQTL QTEATTLSAQ LTLFQRDTTG  240
LSSENTELKL RLQAMEQQAQ LRDALNEALK KEVERLKIAT GEMVSPSESF NLGMHQMSFN  300
QPNFFPLPPQ PGSSGHPNMH LPSFTHTPPS MSAHHLQQAD SHNLSDYMQN DPTRQLQGLD  360
ISNKGLNIVK SEGPSLSASE NSSTF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0215s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446725.10.0transcription factor RF2b
SwissprotQ6S4P41e-100RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A2K1WTC90.0A0A2K1WTC9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s15040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.12e-99bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]