PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0215s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 222aa MW: 23886.2 Da PI: 8.5988

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0215s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.2	3.9e-40	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++g i++lqqq+ SapurV1A.0215s0070.1.p 42 PCAACKLLRRRCAEECPFSPYFSPLEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGSMGAISALQQQI 128 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 + l+ael+++++ SapurV1A.0215s0070.1.p 129 QLLQAELSATRAD 141 ******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-40	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSRDRERIEE IGKRIKRESD ASSLMGRRQM LGLPGILNTV TPCAACKLLR RRCAEECPFS 60 PYFSPLEPQK FAAVHKVFGA SNVSKLLMEV PESQRADAAN SLVYEANLRL RDPVYGSMGA 120 ISALQQQIQL LQAELSATRA DILSYKYREA AASNIISSTH AALVSSATIS APSQTLAPPP 180 PPPPPLSVVV SLSSSSPLYT PPTSTSGYST LSSENNVPYF D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	42	149	11	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	42	149	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0215s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006371667.1	1e-124	LOB domain-containing protein 15
Swissprot	Q8L5T5	3e-78	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	U5FGN9	1e-123	U5FGN9_POPTR; Uncharacterized protein
STRING	POPTR_0019s14790.1	1e-123	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-73	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	SapurV1A.0215s0070.1.p

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]