PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0214s0320.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 222aa MW: 25093.8 Da PI: 8.0851 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H SapurV1A.0214s0320.2.p 55 YSCSFCKREFRSAQALGGHMNVH 77 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.73E-6 | 52 | 81 | No hit | No description |
Pfam | PF13912 | 2.2E-6 | 54 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.24 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEQAQYWLWM KRKQLLKSQL EAATDSRLNG SWEEKAFAED ASGNLGGCIW PARYYSCSFC 60 KREFRSAQAL GGHMNVHRRD RARLKQSLTL SPRNDVFQHQ NHIQSSHKSS GSHFPTDVCN 120 LENYDLDPKL ISVPGAINYN ASTLSSSRFS AFSTHEKFSD HAFVSPFSSY FEQEQHKGYP 180 YVHNNLSGSD HSLANDSESK PGAEKNQVAE SLKPMFQCCR C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-11 | 50 | 77 | 2 | 29 | superman protein |
2l1o_A | 2e-11 | 50 | 77 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0214s0320.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM444546 | 1e-38 | AM444546.2 Vitis vinifera contig VV78X197403.26, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033640.1 | 1e-127 | PREDICTED: zinc finger protein 1-like isoform X3 | ||||
TrEMBL | B9HML0 | 1e-120 | B9HML0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s05930.1 | 1e-121 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0214s0320.2.p |