PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0213s0290.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 300aa MW: 32818.2 Da PI: 8.6584 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H SapurV1A.0213s0290.1.p 121 YECKTCNRTFPSFQALGGHRASH 143 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 199 | 221 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H SapurV1A.0213s0290.1.p 199 HECSVCGAEFTSGQALGGHMRRH 221 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.83E-8 | 120 | 143 | No hit | No description |
Pfam | PF13912 | 2.7E-13 | 120 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.83E-8 | 194 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 197 | 223 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 199 | 221 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 199 | 223 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.3E-13 | 199 | 223 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 201 | 221 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEASEEVAAN VVKGRRTKRS RVQSPLPHGL TANSSSGDGG ASWSPTSSIN EFQDSTEEEE 60 DMANCLILLA KGHSRDFPKQ QQHRQDYDSR GGGVYTTKFN SRKFLETANS TGSGKVGYYV 120 YECKTCNRTF PSFQALGGHR ASHKKPKATH NDERKKNLSP SSDEEDGGHY NNVSPLCLQM 180 SDNNTNRGTY SNHNKGKIHE CSVCGAEFTS GQALGGHMRR HRGPLLSSTA TLSLTPLAIE 240 SEKPKKARKA LSLDLDLNLP APEDEKSSFA SKQQQQHHQQ PQQNTPLVFS SPALVGCHY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0213s0290.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024338.1 | 0.0 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A2K1YYY3 | 1e-177 | A0A2K1YYY3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s23610.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-65 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0213s0290.1.p |