PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0212s0190.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 452aa    MW: 50687.5 Da    PI: 6.8749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0212s0190.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.88.7e-36481901128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                             lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r
  SapurV1A.0212s0190.2.p  48 LPAGVKFDPTDQELI-EHLEAKVEAKDmrshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRR 129
                             799************.99*********5554442...143333666646**********.555666799****************** PP

                     NAM  77 atk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             +++        + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  SapurV1A.0212s0190.2.p 130 KIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 190
                             73334555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3844209IPR003441NAC domain
PROSITE profilePS5100532.70448209IPR003441NAC domain
PfamPF023652.5E-1649190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MTSKSNMAAS ISSSNLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWLGLPA GVKFDPTDQE  60
LIEHLEAKVE AKDMRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECDLQGG ETRWHKTGKT RPVMVNGKQK GCKKILVLYT NFGKNRRPEK  180
TNWVMHQYHL GQLEEEKEGE LVVSKIFYQT QPRQCNFTDR NAPIGEGSND PISRRDSGSG  240
SCSSNEIIPQ RDEISGTGPL AVSISSCTAL DIHQLKSDHF GFTPFRKSFD EVGIREASVA  300
REASASGTCD EIQEHHQRPH HVAHDPHQQQ QQQQQQQLHH HHTAHHQIAT AAFHISRPSH  360
PISTIISPPP LHHTSIILDE DPYHVSRLML QNEIQQQHKL GGRSASGLEE FIMGCTSSDV  420
KEESSITNPQ EADWLKYSSF WPDPDNQDPH G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-134619013140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0212s0190.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707950.0AB970795.1 Populus tremula x Populus tremuloides PtxtNAC128 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007270.10.0PREDICTED: uncharacterized protein LOC105113004 isoform X2
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLB9H8X70.0B9H8X7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15740.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-151NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]