PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0209s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 514aa    MW: 55836.7 Da    PI: 9.6343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0209s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156989323
                            ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                            C++C+k F r  nL+ H r H
  SapurV1A.0209s0070.1.p 69 CEICNKGFQRDQNLQLHRRGH 89
                            *******************88 PP
2zf-C2H212.70.00038143165123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k +  +s+ k H +t+
  SapurV1A.0209s0070.1.p 143 WKCEKCSKKYAVQSDWKAHSKTC 165
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.88E-76689No hitNo description
PROSITE profilePS5015710.8246789IPR007087Zinc finger, C2H2
SMARTSM003550.116789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355110108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.88E-7138163No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MMSGDAFSLP SSAAGFSQDQ NNANPNPSPK TNPNHAAKRK RNLPGTPDPD AEVIALSPKS  60
LMATNRFLCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEVRKKVYIC PEKTCVHHEP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESAR ITSVPAATNL NFRNDTVNLP HGFPNRPGVP DIAGIPQFNS  240
GFGPDFSGMN PGNSLGSDHQ QKPGLSLWLN QANSHINPNL NLYVPSSSSG LPEMVQMGSA  300
NLYGSSSSIS FGNLTLSGVP HGLKEEGNSK ANMVHTSASL YSDSVQNKQS KPAAVPNMSA  360
TALLQKAAQM GSTRSNQSFF VNNYGLMSCS SSSSPTPNPI SLNQNPNELH QVFQNVKQAA  420
AESLTTSNCV AMSDAMMCTP SNLDQLMMQA SGKLQNDQTQ LKHQRGSNSI ESGLTRDFLG  480
MSSESGRPFS PQDLAKFASL SSAMSLNHFT VNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-38139204368Zinc finger protein JACKDAW
5b3h_F3e-38139204368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193105KLKQRTNKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0209s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381470.10.0zinc finger protein JACKDAW
TrEMBLU5GCW40.0U5GCW4_POPTR; C2H2 family protein
STRINGPOPTR_0006s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-112C2H2-like zinc finger protein