PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0208s0190.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRF

Protein Properties

Length: 400aa MW: 43408.3 Da PI: 7.5009

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0208s0190.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.3	3.6e-25	150	194	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v +g+++CErHlhrgr+rsrk++e+ SapurV1A.0208s0190.2.p 150 DPEPGRCRRTDGKKWRCSRDVFAGHNYCERHLHRGRNRSRKPVEN 194 79****************************************997 PP
2	QLQ	47.4	5.9e-17	80	115	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ +Q+q+L+ Q+l+y+ ++a++ +PpeLlq+i+k SapurV1A.0208s0190.2.p 80 YFSLEQWQELELQALIYRFMLAGVAIPPELLQPIKK 115 6*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.1E-10	79	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-12	80	113	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.849	80	115	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.34	150	194	IPR014977	WRC domain
Pfam	PF08879	3.4E-21	151	193	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDFHLKQRRN QHEESGQQPS AKTQKLLMDP HQAPQHPRSS GPAAFPLFLQ EPGSKISSLS 60 AFLDSSTAAN IRLPDIAGNY FSLEQWQELE LQALIYRFML AGVAIPPELL QPIKKSLLHP 120 HSPPCFLHHS LQQQCSYYQP SWYWGRADMD PEPGRCRRTD GKKWRCSRDV FAGHNYCERH 180 LHRGRNRSRK PVENPTPTIS TNVTCTGIGG AGGTASAAAF NHSAAPTISE VVNGTHFSHT 240 LESPSIHFNH SSKTESKGLI GSLPPNEEAG NRYDGHILWH FFDDWPRSVD ESGNVNGGSS 300 MNSLTCLSVS MPGNSPASDV SLKLSTGNNI AEPEPEPVPA PTPRGNTSKW AAAGWGTNIT 360 NQAVASMGGP LAEALSSSTT NSSPTSVLHQ LSRPTVSET*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDFHLKQRRN QHEESGQQPS AKTQKLLMDP HQAPQHPRSS GPAAFPLFLQ EPGSKISSLS  60
AFLDSSTAAN IRLPDIAGNY FSLEQWQELE LQALIYRFML AGVAIPPELL QPIKKSLLHP  120
HSPPCFLHHS LQQQCSYYQP SWYWGRADMD PEPGRCRRTD GKKWRCSRDV FAGHNYCERH  180
LHRGRNRSRK PVENPTPTIS TNVTCTGIGG AGGTASAAAF NHSAAPTISE VVNGTHFSHT  240
LESPSIHFNH SSKTESKGLI GSLPPNEEAG NRYDGHILWH FFDDWPRSVD ESGNVNGGSS  300
MNSLTCLSVS MPGNSPASDV SLKLSTGNNI AEPEPEPVPA PTPRGNTSKW AAAGWGTNIT  360
NQAVASMGGP LAEALSSSTT NSSPTSVLHQ LSRPTVSET*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0208s0190.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024458787.1	0.0	growth-regulating factor 4 isoform X2
Swissprot	Q8L8A7	4e-81	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	B9MTP8	0.0	B9MTP8_POPTR; Uncharacterized protein
STRING	POPTR_0006s11630.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-71	growth-regulating factor 4

Link Out ? help Back to Top
Phytozome	SapurV1A.0208s0190.2.p

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]