PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0206s0280.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 567aa    MW: 64040.6 Da    PI: 6.314
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0206s0280.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.22.1e-24200253155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k+r++W+ +LH++Fv+av+q+ G +k  Pk+il++m+v+ Lt+e+v+SHLQkYRl
  SapurV1A.0206s0280.3.p 200 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDMMNVPWLTRENVASHLQKYRL 253
                             68*******************.9*******************************8 PP
2Response_reg80.46.1e-27201281109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++  ge + 
  SapurV1A.0206s0280.3.p  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKggYDIVISDVYMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSR 104
                             89*********************.***************999999**********************6644.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga d+l Kp+ ++el++
  SapurV1A.0206s0280.3.p 105 VMKGVQHGACDYLLKPIRMKELRN 128
                             *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-4417141No hitNo description
SuperFamilySSF521722.42E-3517142IPR011006CheY-like superfamily
SMARTSM004482.5E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.53319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.4E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.86E-3021134No hitNo description
Gene3DG3DSA:1.10.10.608.5E-28197258IPR009057Homeodomain-like
SuperFamilySSF466893.94E-17198257IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-21200253IPR006447Myb domain, plants
PfamPF002497.3E-8202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MENNGFSSPR NDSFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RDALNLLRER  60
KGGYDIVISD VYMPDMDGFK LLEQVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VRDIEILEGV ESFQMTRNGS DLYEDGHVLC GEDLTSMKKR  180
KDIESKHDGK DTGDYTSTKK ARVVWSVDLH QKFVKAVNQI GFDKVGPKKI LDMMNVPWLT  240
RENVASHLQK YRLYLSRLQK ENGFKNPAGG IKQSDSPLRD SAGSFGSWNS INLQASDVSN  300
GSYRFSGSSL VVHNEDLRSH ESDRKRVVST PVAEPKRTLN VDVPNPCILR SSPMEFGHPL  360
APPRSELDFG AFDSTFPTKY SWCGIPEIQR KIEHGPLHLN GGFSHPPLPG QKQHTRAGYP  420
QPAPAISCAL SLTERETSFP DKAKPSYNQT RINMANHQAV EPISRSTSST ENQGLNMNCI  480
AELESSRKNI NLGMPLFTTL EEDLQVCWIP ADCYTNPGLQ NIEVSEFFDR GLIRDEPVHL  540
NDELRFDYEF YDPTEYSLID QTMFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18196258163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0206s0280.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081450.0FN908145.1 Populus x canadensis mRNA for putative B-type response regulator 14 (rr14 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463384.10.0two-component response regulator ARR11 isoform X3
TrEMBLA0A2K1ZJ910.0A0A2K1ZJ91_POPTR; Two-component response regulator
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-134response regulator 11