PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0206s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 585aa    MW: 65787.5 Da    PI: 5.9913
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0206s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like248.9e-08200221122
                 G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                             k+r++W+ +LH++Fv+av+q+G
  SapurV1A.0206s0280.1.p 200 KARVVWSVDLHQKFVKAVNQIG 221
                             68******************96 PP
2G2-like38.23.1e-122442712855
                 G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRl 55 
                              Pk+il++m+v+ Lt+e+v+SHLQkYRl
  SapurV1A.0206s0280.1.p 244 GPKKILDMMNVPWLTRENVASHLQKYRL 271
                             5**************************8 PP
3Response_reg80.36.4e-27201281109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++  ge + 
  SapurV1A.0206s0280.1.p  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKggYDIVISDVYMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSR 104
                             89*********************.***************999999**********************6644.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga d+l Kp+ ++el++
  SapurV1A.0206s0280.1.p 105 VMKGVQHGACDYLLKPIRMKELRN 128
                             *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-3517142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-4417141No hitNo description
SMARTSM004482.5E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.53319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.7E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.23E-3021134No hitNo description
Gene3DG3DSA:1.10.10.605.3E-25197276IPR009057Homeodomain-like
SuperFamilySSF466893.76E-13198275IPR009057Homeodomain-like
PfamPF002494.2E-6202270IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-10242271IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MENNGFSSPR NDSFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RDALNLLRER  60
KGGYDIVISD VYMPDMDGFK LLEQVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VRDIEILEGV ESFQMTRNGS DLYEDGHVLC GEDLTSMKKR  180
KDIESKHDGK DTGDYTSTKK ARVVWSVDLH QKFVKAVNQI GFDTTSLSCF DGAMTGSVCL  240
AEVGPKKILD MMNVPWLTRE NVASHLQKYR LYLSRLQKEN GFKNPAGGIK QSDSPLRDSA  300
GSFGSWNSIN LQASDVSNGS YRFSGSSLVV HNEDLRSHES DRKRVVSTPV AEPKRTLNVD  360
VPNPCILRSS PMEFGHPLAP PRSELDFGAF DSTFPTKYSW CGIPEIQRKI EHGPLHLNGG  420
FSHPPLPGQK QHTRAGYPQP APAISCALSL TERETSFPDK AKPSYNQTRI NMANHQAVEP  480
ISRSTSSTEN QGLNMNCIAE LESSRKNINL GMPLFTTLEE DLQVCWIPAD CYTNPGLQNI  540
EVSEFFDRGL IRDEPVHLND ELRFDYEFYD PTEYSLIDQT MFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ab6_A2e-14181362122CHEMOTAXIS PROTEIN CHEY
1ab6_B2e-14181362122CHEMOTAXIS PROTEIN CHEY
3olv_A2e-14181366126Chemotaxis protein CheY
3olv_B2e-14181366126Chemotaxis protein CheY
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0206s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081450.0FN908145.1 Populus x canadensis mRNA for putative B-type response regulator 14 (rr14 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463381.10.0two-component response regulator ARR11 isoform X1
TrEMBLA0A2K1ZJ940.0A0A2K1ZJ94_POPTR; Two-component response regulator
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-131response regulator 11