PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0203s0290.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 735aa    MW: 81049.8 Da    PI: 5.7421
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0203s0290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08124146427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                             +lC ff++ G+C  GdrC F+Hgp
  SapurV1A.0203s0290.1.p 124 VLCIFFQQ-GICLKGDRCAFSHGP 146
                             79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9622655IPR000571Zinc finger, CCCH-type
SMARTSM003560.00172754IPR000571Zinc finger, CCCH-type
PfamPF156632.6E-112781No hitNo description
PROSITE profilePS5010310.6155783IPR000571Zinc finger, CCCH-type
SMARTSM003560.0555982IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6121145IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5121146IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-5124146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4124146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MVAATQPPPP LAPTAPTTTS AEEEALKRNT DCVYFLASPL TCKKGSDCEY RHSEYARVNP  60
RDCYFWLNGN CLNPKCGFRH PPLDGLFGTQ TTASASAGSS LPPSHAAAAT AATHAHHNSG  120
KQGVLCIFFQ QGICLKGDRC AFSHGPNHAS NRVSQSMVLT PGTEPPPPKK AFGGLQKGTQ  180
ERKLPQVNLS KAVEAPTVVK PVSKAEIASA RNSAGFARNV VPPKSMDDEV PRYKPSNLPP  240
EVNGNSSRSN RLHLSRVADD HVIQNGKEAD EYLRESSPGF DVLVDDELRG SDYFHGEDQF  300
GRTIGHEGRN LNSVDEYDMG HSTDYGSLPD DLERYGDPRG SDPYEHMQGQ HAWEQHRVLP  360
ERMLVAPAHL ERRGLSKTDS PEHIEGSDLR YLLSKQRRVN GLRSVVSNDF VPGNHVEERD  420
YRGSSRRDPH HSFSHESSVS SRLRGRIKLP GGSPNEGNDL HVEREIDRGR NRGRLSPVRS  480
MISSQQGRFR DRMKARVEED YIEGRNFRGP QVRRELIDDK GTNFAAPKSL AELRGGTNAE  540
GKLQQSLGKR KCLEDHQPSD ADRSFDGPMS LSEILKRKRG GGAAASGSRI SSVIEDDNTQ  600
KESRQSLISN SNKAVAETQS GSSSSVLKDN DSSHLLKNKE SKFATDDALG TEGENIEIVH  660
RQSSQLPNPN EIETEDGMIA DDGMEDHEYE GDDHEYEQVD EGDYNYEEGE NVDEDEYENE  720
DGDDFAKKIG VVFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0203s0290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314739.20.0zinc finger CCCH domain-containing protein 17
TrEMBLB9HVM70.0B9HVM7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137