PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0203s0200.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 546aa    MW: 58819.6 Da    PI: 9.8136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0203s0200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-057193123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            + C+ C+k F r  nL+ H r H
  SapurV1A.0203s0200.4.p 71 FICEVCTKGFQREQNLQLHRRGH 93
                            89*******************88 PP
2zf-C2H212.60.00041147169123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k +  +s+ k H +t+
  SapurV1A.0203s0200.4.p 147 WKCEKCSKKYAVQSDWKAHSKTC 169
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-67093No hitNo description
SMARTSM003550.0177193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6377193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355150112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-6142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAAASSSAPF FGRPRKENQN QITQQHSSAT TTSTVPAIEP QKKRRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCTKGF QREQNLQLHR RGHNLPWKLK QKTTKEVRRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYFR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPSSFI TIGSHLYGNN NMSLGLSHVG SQISQLQDHH  240
PSGNNMLRLG SSGAAKFEHL IPPPNPSSMP MMPTSGFFMG DANQGPFPSK SLHGLMQLPD  300
LQSNSSSASN LFNLGFFSNN SNPSRISNSD TANTGSTNTN LVNPGLLNAN PFNNVNGAGQ  360
GTALFSTNMS GDHVGSAMSS IFNTSMQQES TTPHMSATAL LQKAAQMGST TSSSSPSGLL  420
RNLGSSSTAG AKSIRPLVPT NFGSSFSNAG TVGEGLEIHM ESESQLQGLM NSLANGTSSM  480
FGNEQENSYT GFDGSSFSRA DDGHMHQGLA GSDKLTLDFL GVGGRVRTIG GGFPQREQQN  540
GINNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35143207367Zinc finger protein JACKDAW
5b3h_F2e-35143207367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0203s0200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465038.10.0protein indeterminate-domain 5, chloroplastic isoform X1
SwissprotQ9ZUL31e-140IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1YRN50.0A0A2K1YRN5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10940.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-110indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]