PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0203s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 546aa MW: 58819.6 Da PI: 9.8136 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.6e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H SapurV1A.0203s0200.1.p 71 FICEVCTKGFQREQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ SapurV1A.0203s0200.1.p 147 WKCEKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-5 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.38E-6 | 70 | 93 | No hit | No description |
SMART | SM00355 | 0.017 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.38E-6 | 142 | 167 | No hit | No description |
SMART | SM00355 | 140 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MAAASSSAPF FGRPRKENQN QITQQHSSAT TTSTVPAIEP QKKRRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCTKGF QREQNLQLHR RGHNLPWKLK QKTTKEVRRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYFR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARHPSSFI TIGSHLYGNN NMSLGLSHVG SQISQLQDHH 240 PSGNNMLRLG SSGAAKFEHL IPPPNPSSMP MMPTSGFFMG DANQGPFPSK SLHGLMQLPD 300 LQSNSSSASN LFNLGFFSNN SNPSRISNSD TANTGSTNTN LVNPGLLNAN PFNNVNGAGQ 360 GTALFSTNMS GDHVGSAMSS IFNTSMQQES TTPHMSATAL LQKAAQMGST TSSSSPSGLL 420 RNLGSSSTAG AKSIRPLVPT NFGSSFSNAG TVGEGLEIHM ESESQLQGLM NSLANGTSSM 480 FGNEQENSYT GFDGSSFSRA DDGHMHQGLA GSDKLTLDFL GVGGRVRTIG GGFPQREQQN 540 GINNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 143 | 207 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 143 | 207 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0203s0200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465038.1 | 0.0 | protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Swissprot | Q9ZUL3 | 1e-140 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2K1YRN5 | 0.0 | A0A2K1YRN5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s10940.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-110 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0203s0200.1.p |
Publications ? help Back to Top | |||
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