PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0201s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 478aa    MW: 53461.3 Da    PI: 8.7341
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0201s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33e-161795183
                trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
                            +Wt++e laLi+a+r+++ +++rg+l++++We+v++ +      +s+ qC++k+e+l+kry+ +k+   k   +  s++ +f 
  SapurV1A.0201s0240.1.p 17 CWTQDESLALIKAYRDKWYSVNRGNLRAADWEAVAASVPL----KSSLQCRHKIEKLRKRYRVEKQKCLKYPGRFFSSWDLFP 95
                            8***********************************9964....799***************999876666555556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-141699No hitNo description
PROSITE profilePS500906.6321870IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MATTTSYATP KRVPPPCWTQ DESLALIKAY RDKWYSVNRG NLRAADWEAV AASVPLKSSL  60
QCRHKIEKLR KRYRVEKQKC LKYPGRFFSS WDLFPLLDSF EIGSLGSKVD QEIDKGNDVG  120
DGFRVKKSGD RYLLTTQKNG KTNGDLDPDE DFGLGPDLAF RATKYSKVDG GFNALGDSGS  180
GFDFKFVADK NLVSVAFRPR DYVGVNGKLT TSVGLNCDYG GEFDYKVEKT RDRNVMPQGV  240
RLPDYEMVAD NNVSYARNFT KGAHSYGGFP LKSLGVRNLA FHGLNPKNFN KADGKPTPDF  300
CENDDHVEID YINDERDEFG KKKFNGWSYS PTGFRPKNCG EIGGNSRPSA RSRAVNVGMN  360
GIGDGVKRER DPISLLVSAI EQATESFVRV EMMKMDMASE IEKMRMEMGL KHNQMILESQ  420
QQIVDTLAKA MLEKKKEREK VEALPPNSSR KGYSQNAAVD FERIGKSIVE EGETCFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0201s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368939.10.0uncharacterized protein LOC18094549
TrEMBLU5GPJ60.0U5GPJ6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137971421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-30Trihelix family protein