PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0199s0220.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 759aa MW: 88031 Da PI: 4.7226

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0199s0220.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.2e-22	150	233	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Yn YAk++GF +r+++s ++++++e + ++C++eg++++++ + ++r+etrtgC a+l++++ ++++w+v++++leHnH SapurV1A.0199s0220.1.p 150 NYYNCYAKDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTSKEAH-----SRRKETRTGCLAMLRLRLVESNRWRVDEVKLEHNH 231 69**************************************98877.....8999***************************** PP FAR1 88 el 89 + SapurV1A.0199s0220.1.p 232 LF 233 77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-19	150	233	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-27	355	445	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.396	640	676	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-5	651	678	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MPMIEIEEGS QNSEQLLEEE GDDLEFDSND LEIEGDDPGI EDNDLGIEDN NLEQDNDLGI 60 EDNNLEQDND LGIEDNNLEQ DKNLGIEGHD LPEGNDLEDN CEQLFDIEYH VLENNRDDAT 120 LEVQNGDFLG KDYPPPVLGM EFESYDEAYN YYNCYAKDLG FAIRVKSSWT KRNSKEKRGA 180 VLCCNCEGFK TSKEAHSRRK ETRTGCLAML RLRLVESNRW RVDEVKLEHN HLFDPARAQN 240 SKSHKKMDAG AKRKVEPTVD VEVRTIKLYR TAAVDPLGYG STNSNEGESS QHVDRSKHLK 300 LKKGDAHIIH DYFCKVQLRN PNFFYLMDLN DEGFLRNVFW IDYRSRAAYG YFSDVVIFDT 360 TCLLNKYEIP LFAFVGINQH GQPILLGCGL LVDETLETYI WLFRAWLTCM LGRPPQTIIT 420 EQCKAMQSAI AEVFPRAHHR FCLSRVVHRI FDNLGTLPDY EGFQRTLNVA IHDSLKVDEF 480 EMAWEDMIQR FGIADNECLR ACYEDRERWA PVYSKDTCFA GISTLLKDGS IRFFNGYVNQ 540 QTTLKEFFDM NEIILQKKYQ KEALDDFESR HSSPILRTGS FYELQLSRVY TNEIFKRFQD 600 EVQMMSSCFS ITQVHANGPL ITYMIKERQD EENLRDIKNF EVMYDKRGAE VRCICSCFNS 660 KGYLCRHALC ILNYNGVEQI PPPYISARWR KDLKRLYVPD SGSNNIDVAN PVQWFDHLYR 720 RALQVVEEGM ISEDRYMVAW QAFKESLNKV RLVAEKHL*

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MPMIEIEEGS QNSEQLLEEE GDDLEFDSND LEIEGDDPGI EDNDLGIEDN NLEQDNDLGI  60
EDNNLEQDND LGIEDNNLEQ DKNLGIEGHD LPEGNDLEDN CEQLFDIEYH VLENNRDDAT  120
LEVQNGDFLG KDYPPPVLGM EFESYDEAYN YYNCYAKDLG FAIRVKSSWT KRNSKEKRGA  180
VLCCNCEGFK TSKEAHSRRK ETRTGCLAML RLRLVESNRW RVDEVKLEHN HLFDPARAQN  240
SKSHKKMDAG AKRKVEPTVD VEVRTIKLYR TAAVDPLGYG STNSNEGESS QHVDRSKHLK  300
LKKGDAHIIH DYFCKVQLRN PNFFYLMDLN DEGFLRNVFW IDYRSRAAYG YFSDVVIFDT  360
TCLLNKYEIP LFAFVGINQH GQPILLGCGL LVDETLETYI WLFRAWLTCM LGRPPQTIIT  420
EQCKAMQSAI AEVFPRAHHR FCLSRVVHRI FDNLGTLPDY EGFQRTLNVA IHDSLKVDEF  480
EMAWEDMIQR FGIADNECLR ACYEDRERWA PVYSKDTCFA GISTLLKDGS IRFFNGYVNQ  540
QTTLKEFFDM NEIILQKKYQ KEALDDFESR HSSPILRTGS FYELQLSRVY TNEIFKRFQD  600
EVQMMSSCFS ITQVHANGPL ITYMIKERQD EENLRDIKNF EVMYDKRGAE VRCICSCFNS  660
KGYLCRHALC ILNYNGVEQI PPPYISARWR KDLKRLYVPD SGSNNIDVAN PVQWFDHLYR  720
RALQVVEEGM ISEDRYMVAW QAFKESLNKV RLVAEKHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0199s0220.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147781	2e-95	EF147781.1 Populus trichocarpa clone WS0124_P20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044860.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	U5GHZ0	0.0	U5GHZ0_POPTR; Uncharacterized protein
STRING	POPTR_0003s02550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	SapurV1A.0199s0220.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]