PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0198s0370.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 501aa    MW: 57149.2 Da    PI: 9.6293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0198s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1719108299
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             fkv   +d+l++g l+lp kf++++g++    + l     +g+ We++l  +k++g+++l+kGWkeF++   +  g f+vF+++g+ 
  SapurV1A.0198s0370.1.p  19 FKVI-LEDSLREGKLMLPQKFVTRYGMDL---TNLAHLKVHGEAWEIEL--TKCDGKVWLQKGWKEFAEHYSVTCGHFLVFEYEGNC 99 
                             5544.589999999***********9883...35777788*********..************************************ PP

                             EE..EEEEE-S CS
                      B3  89 efelvvkvfrk 99 
                             +f  +v +f++
  SapurV1A.0198s0370.1.p 100 DF--RVLIFDN 108
                             *9..9999987 PP
2B370.42.3e-22240334198
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+ ++ ps+v++s rl++p +fa+++  k+++   +tl  ++gr+W vk++ +++++r+v+  GW  F+k+n+L +gDf++F+l++ 
  SapurV1A.0198s0370.1.p 240 FKAAMRPSYVHTSYRLCVPSSFARKYFTKNHG--YVTLSVLDGRTWPVKYC-NRTKSRVVFCHGWMAFAKDNKLAVGDFCIFELINI 323
                             667789********************766555..68888899********5.777778999**********************9965 PP

                             SEE..EEEEE- CS
                      B3  88 sefelvvkvfr 98 
                             +e +++v +fr
  SapurV1A.0198s0370.1.p 324 TEMSFKVVFFR 334
                             66656777776 PP
3B356.74.5e-18405488187
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ff v ++s++l+++ +++p +f+e++ +  ++    ++ + + rsW+vkli r +++  vl++GW +F+++n Lk+gD++ F+++++
  SapurV1A.0198s0370.1.p 405 FFEVVIRSSYLARSFVCVPMSFVERYFKHINQ---YVMLQVEDRSWSVKLITRSSQRVAVLSAGWARFARENSLKVGDVCDFEMIKN 488
                             889999********************544334...56666677*******76666666*************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2313109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2214109IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-1516107No hitNo description
PROSITE profilePS5086312.53417109IPR003340B3 DNA binding domain
SMARTSM010198.0E-1618109IPR003340B3 DNA binding domain
PfamPF023621.5E-1418108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-27232336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-26235334IPR015300DNA-binding pseudobarrel domain
CDDcd100174.53E-26238334No hitNo description
SMARTSM010192.4E-19240336IPR003340B3 DNA binding domain
PfamPF023621.6E-19240334IPR003340B3 DNA binding domain
PROSITE profilePS5086314.79240336IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-21401495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19402492IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-15405499IPR003340B3 DNA binding domain
PfamPF023625.1E-16405488IPR003340B3 DNA binding domain
CDDcd100171.21E-15405489No hitNo description
PROSITE profilePS5086313.14405499IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGEGDAKPSV FVAKPPHFFK VILEDSLREG KLMLPQKFVT RYGMDLTNLA HLKVHGEAWE  60
IELTKCDGKV WLQKGWKEFA EHYSVTCGHF LVFEYEGNCD FRVLIFDNSA TEMDYPLKSK  120
HEERMEESNS VEILDNFSPS RRTRKESPLP CPRSHKMGRT NSTFETGTCS KLNTRSRGVK  180
SKKKAKLRCS VRGLDEEESI RGGRRLSHTG ANANMRPLTC YEKAKALGRA RAFKSENPFF  240
KAAMRPSYVH TSYRLCVPSS FARKYFTKNH GYVTLSVLDG RTWPVKYCNR TKSRVVFCHG  300
WMAFAKDNKL AVGDFCIFEL INITEMSFKV VFFRPEDVES LLSSADTGGA NQVEPSQSDW  360
NSKDGAGISN PDDEHKPGKF EHSESRFEVK PGSETESKFI STRPFFEVVI RSSYLARSFV  420
CVPMSFVERY FKHINQYVML QVEDRSWSVK LITRSSQRVA VLSAGWARFA RENSLKVGDV  480
CDFEMIKNGV LKDKISRNGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-2120848817141B3 domain-containing transcription factor VRN1
4i1k_B8e-2120848817141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0198s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454891.10.0B3 domain-containing transcription factor VRN1 isoform X5
TrEMBLA0A3N7F1F90.0A0A3N7F1F9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-50B3 family protein