PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0198s0100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 258aa MW: 28255.1 Da PI: 10.5155 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.9 | 3.6e-12 | 222 | 245 | 2 | 25 |
--SS-EEEEEEE--TT-SS-EEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYY 25 D+++WrKYGqK++kgs++pr Y+ SapurV1A.0198s0100.2.p 222 TDEFSWRKYGQKPIKGSPYPRYYF 245 69********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.9E-16 | 175 | 219 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-11 | 208 | 245 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.737 | 216 | 245 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-9 | 219 | 245 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0016 | 221 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-8 | 223 | 245 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAVDLVGYSK MEDQTAIQEA ASAGFKSMEH LIFSLSNQTP QSHQLDCREI TNFTVAKFKQ 60 VISILNRTGH ARFRRGPTSS PSSSPVPVRP VLQEPQKLNL DFVNRDNPPK AGSKNDLPLG 120 IQYSKECFSS GTTTSSLMSS VTADGSVSNG KQGGSSLFGT QARSTGKPPL SSTHRKKCQD 180 HALSARKISS AGSCHCSKRR KSRVKRTVRV PAVSSKIADI PTDEFSWRKY GQKPIKGSPY 240 PRYYFILCLN YPPFDHV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0198s0100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377427 | 0.0 | GQ377427.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308998.1 | 1e-146 | probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 3e-78 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | B9HAN3 | 1e-144 | B9HAN3_POPTR; WRKY family protein | ||||
STRING | POPTR_0006s07170.1 | 1e-145 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 3e-60 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0198s0100.2.p |