PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0196s0430.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 254aa MW: 28468.4 Da PI: 7.1842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0196s0430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	73	125	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn++Er RR++i+s ++ Lr+llP a + kKls +++ +A +Y+ +Lq SapurV1A.0196s0430.1.p 73 KKLSHNANERDRRKKIKSLYSSLRSLLPAA--DQMKKLSEPATVSRALKYVAELQ 125 6789***********************6..49999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.865	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-11	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-15	73	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.68E-5	73	129	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.1E-14	73	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-10	78	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MLELSPPTLL ATFGWPPEEP TSHEQNYLSF IESETPESLI TKFPPSQPQI IQLDRSPSSF 60 TAYSGSAGPS MFKKLSHNAN ERDRRKKIKS LYSSLRSLLP AADQMKKLSE PATVSRALKY 120 VAELQQQVET LVQRKEELLS KLSKQGGVIH QENQRKDTMY SSLLSVSASQ LSDREVVVHI 180 STYKNHKIPL SEILLALEED GLLLKNSSSF ESFGDRVFYN LHLQVTEGAY TFDREAMSAK 240 LVSLSVKMES PFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0196s0430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU282651	1e-141	GU282651.1 Populus balsamifera isolate INU03 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282652	1e-141	GU282652.1 Populus balsamifera isolate FRE01 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282654	1e-141	GU282654.1 Populus balsamifera isolate KUU07 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282656	1e-141	GU282656.1 Populus balsamifera isolate MGR10 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282658	1e-141	GU282658.1 Populus balsamifera isolate STO11 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282659	1e-141	GU282659.1 Populus balsamifera isolate STO11 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282660	1e-141	GU282660.1 Populus balsamifera isolate HAY07 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282661	1e-141	GU282661.1 Populus balsamifera isolate HAY07 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282662	1e-141	GU282662.1 Populus balsamifera isolate GIL14 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282663	1e-141	GU282663.1 Populus balsamifera isolate GIL14 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282664	1e-141	GU282664.1 Populus balsamifera isolate LOV02 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282665	1e-141	GU282665.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282666	1e-141	GU282666.1 Populus balsamifera isolate POR11 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282667	1e-141	GU282667.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282668	1e-141	GU282668.1 Populus balsamifera isolate RNA13 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282669	1e-141	GU282669.1 Populus balsamifera isolate RNA13 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282670	1e-141	GU282670.1 Populus balsamifera isolate STL13 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282671	1e-141	GU282671.1 Populus balsamifera isolate STL13 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282672	1e-141	GU282672.1 Populus balsamifera isolate WHR03 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBank	GU282673	1e-141	GU282673.1 Populus balsamifera isolate WHR03 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308882.3	1e-131	transcription factor ORG2
TrEMBL	A0A2K1ZWD5	1e-130	A0A2K1ZWD5_POPTR; Uncharacterized protein
STRING	POPTR_0006s03560.1	1e-132	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	3e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0196s0430.1.p