PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0194s0030.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 421aa    MW: 46691.1 Da    PI: 8.3794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0194s0030.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05364383323
                             ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                             C+ CgksF r++ L++H++++
  SapurV1A.0194s0030.3.p 364 CSQCGKSF-RPEKLHSHMKSC 383
                             ********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061361.2E-4025278IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEASSGIPPK SSSASSEAGG EVRRIHIIYF LSHNLGRFEH PHLIRVHHFN RSGVYLRDVK  60
RWLADLRGKD MPKAFAWSYK RRYKNGYVWQ DLLDDDLITP ISDNEFVLKG SGIFVPPPNP  120
FVGSACGEKK AADLLMKIEN DSRQVENTEV ENKAQDHEQF PSPNQICDDT LPRKTTSSEI  180
SHESPIFSSE TSTVTEDSTK EEENARKPSN PPDEEQIDIK VEHSSSYTNF LGSKSKKNQK  240
KRTDTSSNIE KMGKSYSSGT SKMLRNLMTC GAADTNDAAL VRRSQKCNDK YKPIDKPADQ  300
ICKGEDGGSA RVLATPWNQQ KEQHDIANSR ESFGEVRGSR KQPGGFGGPK VFPPAYKPVA  360
APICSQCGKS FRPEKLHSHM KSCRGLKALT KAASAYIEQT SSPSHISADS ESEDGYFLTN  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0194s0030.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464118.10.0uncharacterized protein LOC7488155 isoform X2
TrEMBLA0A2K1Z1N70.0A0A2K1Z1N7_POPTR; Uncharacterized protein
TrEMBLA0A3N7GXT50.0A0A3N7GXT5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02980.10.0(Populus trichocarpa)