PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0194s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 431aa MW: 47947.6 Da PI: 8.9746

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0194s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	374	393	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF r++ L++H++++ SapurV1A.0194s0030.1.p 374 CSQCGKSF-RPEKLHSHMKSC 393 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	7.7E-41	35	288	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MEIKARRSKR MEASSGIPPK SSSASSEAGG EVRRIHIIYF LSHNLGRFEH PHLIRVHHFN 60 RSGVYLRDVK RWLADLRGKD MPKAFAWSYK RRYKNGYVWQ DLLDDDLITP ISDNEFVLKG 120 SGIFVPPPNP FVGSACGEKK AADLLMKIEN DSRQVENTEV ENKAQDHEQF PSPNQICDDT 180 LPRKTTSSEI SHESPIFSSE TSTVTEDSTK EEENARKPSN PPDEEQIDIK VEHSSSYTNF 240 LGSKSKKNQK KRTDTSSNIE KMGKSYSSGT SKMLRNLMTC GAADTNDAAL VRRSQKCNDK 300 YKPIDKPADQ ICKGEDGGSA RVLATPWNQQ KEQHDIANSR ESFGEVRGSR KQPGGFGGPK 360 VFPPAYKPVA APICSQCGKS FRPEKLHSHM KSCRGLKALT KAASAYIEQT SSPSHISADS 420 ESEDGYFLTN *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MEIKARRSKR MEASSGIPPK SSSASSEAGG EVRRIHIIYF LSHNLGRFEH PHLIRVHHFN  60
RSGVYLRDVK RWLADLRGKD MPKAFAWSYK RRYKNGYVWQ DLLDDDLITP ISDNEFVLKG  120
SGIFVPPPNP FVGSACGEKK AADLLMKIEN DSRQVENTEV ENKAQDHEQF PSPNQICDDT  180
LPRKTTSSEI SHESPIFSSE TSTVTEDSTK EEENARKPSN PPDEEQIDIK VEHSSSYTNF  240
LGSKSKKNQK KRTDTSSNIE KMGKSYSSGT SKMLRNLMTC GAADTNDAAL VRRSQKCNDK  300
YKPIDKPADQ ICKGEDGGSA RVLATPWNQQ KEQHDIANSR ESFGEVRGSR KQPGGFGGPK  360
VFPPAYKPVA APICSQCGKS FRPEKLHSHM KSCRGLKALT KAASAYIEQT SSPSHISADS  420
ESEDGYFLTN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0194s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464118.1	0.0	uncharacterized protein LOC7488155 isoform X2
TrEMBL	A0A2K1Z1N7	0.0	A0A2K1Z1N7_POPTR; Uncharacterized protein
STRING	POPTR_0009s02980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20

Link Out ? help Back to Top
Phytozome	SapurV1A.0194s0030.1.p