PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0189s0240.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 464aa MW: 51081.1 Da PI: 7.3506 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.6 | 3.5e-10 | 178 | 218 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L SapurV1A.0189s0240.1.p 178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 218 788*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-8 | 174 | 237 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 176 | 220 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 6.62E-22 | 178 | 230 | No hit | No description |
Pfam | PF00170 | 2.8E-7 | 178 | 218 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-7 | 178 | 221 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-7 | 179 | 222 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 181 | 196 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.4E-31 | 260 | 335 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 464 aa Download sequence Send to blast |
MGSRKHNNNK AVTEMPSFVP QISTSNPIGT DGNNIRSSRV SDFATIEQSL GFRMEDAVDL 60 SRNPLFNQLK SSGQTIGTDV QFGALNKPLA SSDINLSAAV VGSRPLPLQK EVQVNPVSIL 120 GNHPENWGET SMAEASPRTD TSTDDTEDKN QRFERGQSTA IAASDSSDKS KERAGDQKTL 180 RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISS SGDQTHSMSG 240 NGALAFDAEY SRWLEEENKQ MIELRAAVNS HAGDTELHTI VDSAVAHFND VYRLKGTAAK 300 ADVFHILSGM WKTPAERCFM WIGGFRSSEL LKLLVNQLEP LTEQQLVGIY NLQQSSQQAE 360 DALSQGMEAL QQSLAETLAN GNPGSSGPSG NVANYMGQMA MAMGKLGTLE GFLRQADNLR 420 QQTLEQMHRI LTTRQSARAL LAVHDYFSRL RALSSLWLAR PQE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0189s0240.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF195120 | 0.0 | EF195120.1 Populus tremula x Populus alba TGA transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323247.1 | 0.0 | transcription factor TGA2.3 isoform X1 | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | B9IHR1 | 0.0 | B9IHR1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s03590.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-146 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0189s0240.1.p |