PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0188s0520.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ZF-HD

Protein Properties

Length: 299aa MW: 33097.8 Da PI: 7.3879

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0188s0520.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.6	2.2e-31	70	127	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++rY+eCl+NhAas+Gg ++DGCgEfmp geeg+ +alkCaAC+CHRnFHR+e + e SapurV1A.0188s0520.1.p 70 SNTRYRECLRNHAASVGGSVYDGCGEFMPG-GEEGSLEALKCAACECHRNFHRKEIDGE 127 5789***********************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-23	71	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.7E-29	72	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.9E-29	73	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.329	74	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.18E-16	211	279	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-29	216	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.6E-29	220	277	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEIRGPENDI RTPVPSGYSH QSSGLERRKD GNHNGTTVLT YTQTLDRQPS RSPNPDQLAI 60 ISSGPNSKAS NTRYRECLRN HAASVGGSVY DGCGEFMPGG EEGSLEALKC AACECHRNFH 120 RKEIDGETQF SPGSRRSATM VLSLQLPPPL PSPTVLHHHH HHQRYSMGLH SSPNTASMVQ 180 PMSVAFGGVS GGNESSSEDL NPFLSNAEGV PPPPPYAMSK KRFRTKFTPE QKDKMMELAD 240 KIGWRINKQD EEEVQSFCAE VGVRRQVFKV WMHNNKNLKK QPEQQVPLDE NENGNENP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-23	219	277	16	74	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0188s0520.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028851.1	1e-176	PREDICTED: zinc-finger homeodomain protein 5-like
Swissprot	Q9FRL5	4e-68	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	B9H8Q9	1e-174	B9H8Q9_POPTR; Uncharacterized protein
STRING	POPTR_0005s24950.1	1e-174	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	5e-53	homeobox protein 24

Link Out ? help Back to Top
Phytozome	SapurV1A.0188s0520.1.p