PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0188s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 466aa MW: 52217.7 Da PI: 6.8728 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.7e-10 | 387 | 424 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LA+++gLt++qV++WF N R + SapurV1A.0188s0170.1.p 387 FEHflHPYPNESEKLMLASQTGLTKNQVSNWFINARVR 424 554459******************************88 PP | |||||||
2 | BELL | 105.6 | 3.2e-34 | 250 | 321 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++e++ k+akL+ lleeV+ rY++y++q++ v+ssFe++aglg+ak+Yt+lAl+a+S+hF L+dai++qi SapurV1A.0188s0170.1.p 250 EKHEVHLKIAKLIALLEEVEGRYEKYYHQMEEVVSSFEEIAGLGAAKSYTALALQAMSKHFCKLRDAIVSQI 321 6799*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.8E-31 | 183 | 319 | IPR006563 | POX domain |
Pfam | PF07526 | 7.0E-40 | 189 | 318 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.147 | 365 | 428 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-10 | 368 | 429 | No hit | No description |
SMART | SM00389 | 8.0E-10 | 368 | 432 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-28 | 373 | 434 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-18 | 373 | 436 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-17 | 385 | 424 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MVSQDSSSNS ASSMLHQFII SHSISSQNQF QSQNFDAFGL NLRGSNTFPQ SHGVLPSFQS 60 LEERMSRSID LVQAPSVEQE TGISHTRHLM NLHETANETN RQTQRLSLSL GSHMLAPQVQ 120 YRQRSFNSDL ISPSYLISRE DEARETCNLE GEQGNTDYSL IGSGFPSPST SSGRRSSTAY 180 GTESLAVAIS NSRYLKPAQS LLEEIVHVSC KAVEISNEKC VRKLIRCRGS LGLSSELKAE 240 LWGNGLVHAE KHEVHLKIAK LIALLEEVEG RYEKYYHQME EVVSSFEEIA GLGAAKSYTA 300 LALQAMSKHF CKLRDAIVSQ INETRRKFSQ DLPKISSGLS KLSLFDKETK HNRSLQQLGM 360 TQSQRQAWRP IRGLPETSVA ILRSWLFEHF LHPYPNESEK LMLASQTGLT KNQVSNWFIN 420 ARVRLWKPMI EEMYKVEFAD SSEDSNPLLG SPFMAGEVVS DHSEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 9e-17 | 374 | 431 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 9e-17 | 374 | 431 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0188s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456830.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_024456831.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_024456832.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_024456833.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Swissprot | Q1PFD1 | 1e-106 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A3N7GHG6 | 0.0 | A0A3N7GHG6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s25350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12645 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 1e-108 | BEL1-like homeodomain 11 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0188s0170.1.p |