PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0187s0440.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GeBP

Protein Properties

Length: 338aa MW: 37173.6 Da PI: 5.4731

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0187s0440.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	74.8	1.6e-23	1	79	19	97
DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++++++++gksp++d +f+ fvk+s+++++++sq+++K rrLK K+ ++v+k +++ + fsk+hd+++ elskkiWg SapurV1A.0187s0440.1.p 1 MVEYQSEKGKSPFADNGDFHGFVKESLHVDATNSQFLDKFRRLKMKYFTDVEKNEKEIDEIFSKPHDSECVELSKKIWG 79 89*************************************************99*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.4E-20	1	79	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MVEYQSEKGK SPFADNGDFH GFVKESLHVD ATNSQFLDKF RRLKMKYFTD VEKNEKEIDE 60 IFSKPHDSEC VELSKKIWGA GSIEVGKKGN MNKKSGKNVS SGGGGGEGEG EGGGGMELTL 120 GLAKQGSEEA NGEKGKLSVR KGRRGSNEEV KVEGNEGNLK KHRQVLDEAD EGEAGNVKKG 180 KRGLSEKVNG EGKGKGGKRE QRSSDEEMSG EGEEVNMTVK KQRRLVNDEM NGGGMELSVK 240 KRNAVANEEL DKEEAGSEDL WDKYPYLRSS LDGENLSGDV KERTMLMLGM AEEEKLAELE 300 REWRSLMKAK LEFIVMQKDL IAKQIKLSLD AMNSHGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0187s0440.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309849.2	0.0	GLABROUS1 enhancer-binding protein-like 1
TrEMBL	B9HE52	0.0	B9HE52_POPTR; Uncharacterized protein
STRING	POPTR_0007s02800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20654	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	4e-14	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	SapurV1A.0187s0440.1.p