PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0187s0430.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 114aa MW: 12886.8 Da PI: 5.1048 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.9 | 5.6e-11 | 37 | 98 | 32 | 90 |
--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 32 esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 + +t +d++gr+We+kl+ r+++ v+++ W ++v+++gL +gD+++++++++ +++ SapurV1A.0187s0430.1.p 37 NAITFNARDPTGRVWEFKLCTRNHGPYkkPVIRGDWLDYVREKGLTVGDVIILTMVEDaENG 98 45788999***********88666544569************************88775544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-10 | 30 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-11 | 30 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.52E-12 | 33 | 94 | No hit | No description |
Pfam | PF02362 | 9.7E-8 | 38 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.515 | 44 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MAQIDIVNKD LTFYDITQCF AYPACSLWAF PMGRGQNAIT FNARDPTGRV WEFKLCTRNH 60 GPYKKPVIRG DWLDYVREKG LTVGDVIILT MVEDAENGVS YNIRVEPNLE LAI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0187s0430.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003253.1 | 2e-53 | PREDICTED: uncharacterized protein LOC105110050 | ||||
TrEMBL | B9HE55 | 9e-57 | B9HE55_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02840.1 | 2e-57 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14473 | 3 | 13 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0187s0430.1.p |