PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0187s0400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 113aa MW: 12947.9 Da PI: 7.2546 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.6 | 1.4e-10 | 38 | 97 | 34 | 90 |
SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 34 ktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 + +d++gr+We+kl+ r++++ v+++ W ++v+++gL + Df++++++++ +++ SapurV1A.0187s0400.1.p 38 INFNARDPTGRVWEFKLCTRNHGRYkkPVIRGDWLDYVDEKGLTVDDFIILTMVEDaENG 97 456789***********98777665779************************88775544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.56E-10 | 7 | 93 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-9 | 8 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-10 | 33 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MEIQLVKKQL TRTDIASCLA YPTGNLWAFQ MVRGRNAINF NARDPTGRVW EFKLCTRNHG 60 RYKKPVIRGD WLDYVDEKGL TVDDFIILTM VEDAENGVSY NIRVEPNLEL AL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0187s0400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003253.1 | 9e-61 | PREDICTED: uncharacterized protein LOC105110050 | ||||
TrEMBL | B9HE55 | 3e-63 | B9HE55_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02840.1 | 5e-64 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14473 | 3 | 13 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0187s0400.1.p |